SMTL ID : 3kii.1

AGAO 5-phenoxy-2,3-pentadienylamine complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.429, H.431, H.590 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.429, A:H.431, A:H.590, H2O.5 CU.8: 3 residues within 4Å: Chain B: H.429, H.431, H.590 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.429, B:H.431, B:H.590, H2O.15

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: D.438, M.439, D.579, I.580 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.47, A:D.579, A:D.579, A:I.580 NA.9: 5 residues within 4Å: Chain B: D.438, M.439, F.444, D.579, I.580 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.47, B:I.580, B:I.580

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: L.588, D.603, T.604 Chain B: H.513, K.608, R.610 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Water bridges: B:K.608, A:Q.517 Salt bridges: B:H.513, B:K.608, B:R.610 Hydrogen bonds: A:D.603 SO4.10: 9 residues within 4Å: Chain A: G.348, I.349, R.365 Chain B: D.314, C.315, L.316, H.343, Y.385 Ligands: GOL.17 11 PLIP interactions: 2 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:I.349, B:L.316 Salt bridges: A:R.365, B:H.343, B:K.399 Water bridges: B:L.316, B:H.343, B:Y.385, B:Y.385, B:Y.385, B:K.399 SO4.11: 9 residues within 4Å: Chain A: D.314, C.315, L.316, H.343, Y.385 Chain B: G.348, I.349, R.365 Ligands: GOL.4 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.314, A:L.316 Water bridges: A:H.343, A:S.372, A:K.399, A:K.399, B:I.349 Salt bridges: A:H.343, A:K.399, B:R.365 SO4.12: 6 residues within 4Å: Chain A: H.513, K.608, R.610 Chain B: L.588, D.603, T.604 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Water bridges: B:Q.517, B:Q.517 Salt bridges: A:H.513, A:K.608, A:R.610

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: E.345, R.368, K.399 Chain B: D.346, W.347, G.348 Ligands: GOL.7, SO4.11 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.345, A:R.368, A:K.399 Water bridges: A:Y.387 GOL.5: 7 residues within 4Å: Chain A: R.617, S.618, P.619, V.620, L.621, D.622 Chain B: T.208 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.617, A:P.619, A:L.621, A:D.622, B:T.208 GOL.6: 8 residues within 4Å: Chain A: Q.517, P.518, T.589, F.591 Chain B: E.451, G.490, K.511, H.513 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Water bridges: A:T.589, A:F.591 Hydrogen bonds: B:K.511, B:K.511 GOL.7: 8 residues within 4Å: Chain A: W.347, R.368, Y.387, Y.389, E.395, E.397 Ligands: GOL.4, GOL.18 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.368, A:R.368, A:E.395 Water bridges: A:Y.387, A:K.399, A:K.608 GOL.13: 5 residues within 4Å: Chain B: D.442, G.443, F.444, T.445, N.497 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.442, B:F.444, B:T.445, B:T.445, B:N.497 GOL.14: 8 residues within 4Å: Chain A: L.207, T.208 Chain B: R.617, S.618, P.619, V.620, L.621, D.622 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:L.207, B:S.618, B:L.621, B:D.622, B:D.622 Water bridges: B:R.617 GOL.15: 11 residues within 4Å: Chain B: R.530, R.531, P.551, T.552, F.555, V.556, H.559, S.560, G.561, G.562, A.563 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.530, B:F.555, B:H.559, B:A.563 Water bridges: B:F.555 GOL.16: 6 residues within 4Å: Chain B: V.157, D.159, H.168, V.195, P.196, A.197 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.159 Water bridges: B:V.195, B:V.195 GOL.17: 8 residues within 4Å: Chain A: D.346, W.347, G.348 Chain B: E.345, R.368, K.399 Ligands: SO4.10, GOL.18 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.346, B:E.345, B:R.368, B:K.399 Water bridges: A:W.347, B:E.397 GOL.18: 8 residues within 4Å: Chain B: W.347, R.368, Y.387, Y.389, E.395, E.397 Ligands: GOL.7, GOL.17 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.368, B:R.368, B:Y.387 Water bridges: B:Y.389, B:K.608

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, Y.H. et al., AGAO 5-phenoxy-2,3-pentadienylamine complex. To be Published

Release Date

2010-10-27

Peptides

Phenylethylamine oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phenylethylamine oxidase

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