SMTL ID : 3klt.3 (2 other biounits)

Crystal structure of a vimentin fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 6 residues within 4Å: Chain A: Y.14, V.17, A.18, N.21, L.22, A.25 No protein-ligand interaction detected (PLIP) PG4.2: 3 residues within 4Å: Chain A: R.11, Y.14, E.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.11, A:E.15

4 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.7: 1 residues within 4Å: Chain B: E.53 No protein-ligand interaction detected (PLIP) CA.8: 1 residues within 4Å: Chain B: K.32 No protein-ligand interaction detected (PLIP) CA.9: 1 residues within 4Å: Chain B: D.35 No protein-ligand interaction detected (PLIP)

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.4: 4 residues within 4Å: Chain B: Y.14, V.17, A.18, N.21 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.21

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 2 residues within 4Å: Chain B: E.24, W.28 No protein-ligand interaction detected (PLIP)

1 x SM: SAMARIUM (III) ION(Non-functional Binders)

SM.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nicolet, S. et al., Atomic structure of vimentin coil 2. J.Struct.Biol. (2010)

Release Date

2010-05-26

Peptides

Vimentin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Vimentin

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