SMTL ID : 3km0.1

17betaHSD1 in complex with 3beta-diol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x AOM: 5-ALPHA-ANDROSTANE-3-BETA,17BETA-DIOL(Non-covalent)

AOM.1: 13 residues within 4Å: Chain A: S.142, V.143, L.149, Y.155, G.186, P.187, H.221, S.222, V.225, F.226, F.259, V.283 Ligands: NAP.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.143, A:P.187, A:F.226, A:F.226, A:F.259 Hydrogen bonds: A:Y.155 AOM.3: 12 residues within 4Å: Chain B: S.142, G.144, L.149, Y.155, G.186, Y.218, H.221, S.222, V.225, F.226, F.259 Ligands: NAP.4 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.149, B:F.226, B:F.259

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 29 residues within 4Å: Chain A: G.9, C.10, S.11, S.12, G.13, I.14, G.15, T.35, L.36, R.37, L.64, D.65, V.66, R.67, N.90, A.91, G.92, L.93, V.113, T.140, G.141, S.142, Y.155, K.159, C.185, G.186, P.187, V.188 Ligands: AOM.1 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:V.188 Hydrogen bonds: A:G.9, A:G.9, A:G.9, A:S.11, A:S.12, A:S.12, A:I.14, A:G.15, A:R.37, A:D.38, A:D.65, A:D.65, A:V.66, A:R.67, A:N.90, A:N.90, A:G.92, A:T.140, A:K.159, A:K.159, A:V.188, A:V.188 Water bridges: A:T.140 NAP.4: 28 residues within 4Å: Chain B: G.9, C.10, S.11, S.12, G.13, I.14, G.15, T.35, L.36, R.37, L.64, D.65, V.66, R.67, N.90, A.91, G.92, L.93, V.113, T.140, G.141, K.159, C.185, G.186, P.187, V.188, F.226 Ligands: AOM.3 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:V.188 Hydrogen bonds: B:G.9, B:G.9, B:C.10, B:S.11, B:S.12, B:I.14, B:G.15, B:R.37, B:D.38, B:D.65, B:D.65, B:V.66, B:N.90, B:N.90, B:G.92, B:K.159, B:K.159, B:V.188, B:V.188 Water bridges: B:S.11, B:R.37, B:R.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mazumdar, M. et al., Molecular basis of sex-steroid translation. To be Published

Release Date

2010-11-10

Peptides

Estradiol 17-beta-dehydrogenase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Estradiol 17-beta-dehydrogenase 1

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