SMTL ID : 3kmt.1 (4 other biounits)

Crystal structure of vSET/SAH/H3 ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- MLZ- SER- ALA- PRO- ALA- THR: Histone H3(Non-covalent)

ALA-ARG-MLZ-SER-ALA-PRO-ALA-THR.1: 23 residues within 4Å: Chain A: N.40, E.48, D.49, Y.50, L.51, F.52, S.53, R.54, S.58, A.66, H.78, E.79, L.80, T.81, L.84, R.88, S.104, Y.105, D.108, Y.109, S.112, R.113 Ligands: SAH.2 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:F.52, A:F.52, A:L.84, A:D.108, A:Y.109 Hydrogen bonds: A:N.40, A:N.40, A:L.51, A:S.53, A:R.54, A:S.58, A:L.80, A:L.80, A:Y.105, A:S.112, A:S.112, A:R.113, A:R.113 Water bridges: A:E.48, A:S.53, A:A.66, A:F.68, A:E.79, A:S.104 Salt bridges: A:E.48

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 18 residues within 4Å: Chain A: L.13, G.14, G.15, Y.16, D.49, Y.50, A.66, I.67, N.69, H.70, Y.105, Y.109, W.110, L.116, T.117, Q.118, N.119 Ligands: ALA-ARG-MLZ-SER-ALA-PRO-ALA-THR.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Y.16, A:Y.16, A:Y.16, A:N.69, A:H.70, A:Y.109, A:Y.109, A:N.119, A:N.119, A:N.119 pi-Stacking: A:W.110, A:W.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, H. et al., Dimerization of a viral SET protein endows its function. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-11-10

Peptides

A612L protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

A612L protein

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