SMTL ID : 3kmx.1 (2 other biounits)

Structure of BACE bound to SCH346572

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x G00: 4-butoxy-3-chlorobenzyl imidothiocarbamate(Non-covalent)

G00.1: 18 residues within 4Å: Chain A: S.19, Q.21, G.22, L.39, D.41, G.43, S.44, Y.80, Q.82, G.83, F.117, I.119, W.124, I.127, D.237, G.239, T.240, T.241 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.39, A:Y.80, A:I.119, A:I.127 Hydrogen bonds: A:D.41, A:D.237, A:T.240 Water bridges: A:D.237 Halogen bonds: A:Q.82 G00.2: 19 residues within 4Å: Chain B: S.19, G.20, Q.21, G.22, L.39, D.41, G.43, S.44, Y.80, Q.82, G.83, F.117, I.119, W.124, I.127, D.237, G.239, T.240, T.241 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.39, B:Y.80, B:I.119, B:I.127 Hydrogen bonds: B:D.41, B:D.237, B:T.240 Water bridges: B:D.237 Halogen bonds: B:Q.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y.S. et al., Application of Fragment-Based NMR Screening, X-ray Crystallography, Structure-Based Design, and Focused Chemical Library Design to Identify Novel muM Leads for the Development of nM BACE-1 (beta-Site APP Cleaving Enzyme 1) Inhibitors. J.Med.Chem. (2010)

Release Date

2010-01-19

Peptides

Beta-secretase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-secretase 1

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