SMTL ID : 3kn4.1

AGAO 6-phenyl-2,3-hexadienylamine complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.429, H.431, H.590 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.429, A:H.431, A:H.590, H2O.4 CU.15: 3 residues within 4Å: Chain B: H.429, H.431, H.590 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.429, B:H.431, B:H.590, H2O.17

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: D.438, M.439, D.579, I.580 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.438, A:D.579, A:I.580 NA.16: 4 residues within 4Å: Chain B: D.438, M.439, D.579, I.580 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.438, B:D.579, B:I.580

22 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: N.366, Y.389, D.391, T.393, E.395, K.608 Ligands: GOL.22 Ligand excluded by PLIP GOL.4: 8 residues within 4Å: Chain A: D.346, W.347, G.348 Chain B: E.345, R.368, K.399 Ligands: GOL.8, SO4.14 Ligand excluded by PLIP GOL.5: 5 residues within 4Å: Chain A: R.477, R.543, R.573, D.574, Q.578 Ligand excluded by PLIP GOL.6: 6 residues within 4Å: Chain A: H.513, K.608, R.610 Chain B: L.588, D.603 Ligands: GOL.7 Ligand excluded by PLIP GOL.7: 9 residues within 4Å: Chain A: E.451, G.490, T.492, K.511, H.513 Chain B: Q.517, P.518, T.589 Ligands: GOL.6 Ligand excluded by PLIP GOL.8: 9 residues within 4Å: Chain A: W.347 Chain B: W.347, R.368, Y.387, E.395, E.397 Ligands: GOL.4, GOL.17, GOL.22 Ligand excluded by PLIP GOL.9: 8 residues within 4Å: Chain A: R.617, S.618, P.619, V.620, L.621, D.622 Chain B: L.207, T.208 Ligand excluded by PLIP GOL.10: 9 residues within 4Å: Chain A: R.530, R.531, T.552, V.556, H.559, S.560, G.561, G.562, A.563 Ligand excluded by PLIP GOL.11: 8 residues within 4Å: Chain A: Y.39, V.42, L.43, D.44, D.248, R.272, R.549, Y.550 Ligand excluded by PLIP GOL.12: 6 residues within 4Å: Chain A: V.157, D.159, H.168, V.195, P.196, A.197 Ligand excluded by PLIP GOL.13: 5 residues within 4Å: Chain A: D.442, G.443, F.444, T.445, N.497 Ligand excluded by PLIP GOL.17: 7 residues within 4Å: Chain B: N.366, Y.389, D.391, T.393, E.395, K.608 Ligands: GOL.8 Ligand excluded by PLIP GOL.18: 8 residues within 4Å: Chain A: E.345, R.368, K.399 Chain B: D.346, W.347, G.348 Ligands: GOL.22, SO4.28 Ligand excluded by PLIP GOL.19: 5 residues within 4Å: Chain B: R.477, R.543, R.573, D.574, Q.578 Ligand excluded by PLIP GOL.20: 6 residues within 4Å: Chain A: L.588, D.603 Chain B: H.513, K.608, R.610 Ligands: GOL.21 Ligand excluded by PLIP GOL.21: 9 residues within 4Å: Chain A: Q.517, P.518, T.589 Chain B: E.451, G.490, T.492, K.511, H.513 Ligands: GOL.20 Ligand excluded by PLIP GOL.22: 9 residues within 4Å: Chain A: W.347, R.368, Y.387, E.395, E.397 Chain B: W.347 Ligands: GOL.3, GOL.8, GOL.18 Ligand excluded by PLIP GOL.23: 8 residues within 4Å: Chain A: L.207, T.208 Chain B: R.617, S.618, P.619, V.620, L.621, D.622 Ligand excluded by PLIP GOL.24: 9 residues within 4Å: Chain B: R.530, R.531, T.552, V.556, H.559, S.560, G.561, G.562, A.563 Ligand excluded by PLIP GOL.25: 8 residues within 4Å: Chain B: Y.39, V.42, L.43, D.44, D.248, R.272, R.549, Y.550 Ligand excluded by PLIP GOL.26: 6 residues within 4Å: Chain B: V.157, D.159, H.168, V.195, P.196, A.197 Ligand excluded by PLIP GOL.27: 5 residues within 4Å: Chain B: D.442, G.443, F.444, T.445, N.497 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.14: 8 residues within 4Å: Chain A: G.348, R.365 Chain B: D.314, C.315, L.316, H.343, Y.385 Ligands: GOL.4 11 PLIP interactions: 3 interactions with chain A, 8 interactions with chain B Water bridges: A:I.349, A:I.349, B:S.372, B:S.372, B:K.399 Salt bridges: A:R.365, B:H.343, B:K.399 Hydrogen bonds: B:L.316, B:Y.385, B:Y.385 SO4.28: 8 residues within 4Å: Chain A: D.314, C.315, L.316, H.343, Y.385 Chain B: G.348, R.365 Ligands: GOL.18 10 PLIP interactions: 3 interactions with chain B, 7 interactions with chain A Water bridges: B:I.349, B:I.349, A:S.372, A:S.372, A:K.399 Salt bridges: B:R.365, A:H.343, A:K.399 Hydrogen bonds: A:L.316, A:Y.385

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, Y.H. et al., AGAO 6-phenyl-2,3-hexadienylamine complex. To be Published

Release Date

2010-10-27

Peptides

Phenylethylamine oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phenylethylamine oxidase

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