SMTL ID : 3kow.2 (5 other biounits)

Crystal Structure of ornithine 4,5 aminomutase backsoaked complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x B12: COBALAMIN(Non-covalent)

B12.1: 20 residues within 4Å: Chain A: E.612, E.614, H.615, S.616, V.617, G.618, V.622, A.663, S.664, I.666, I.667, S.668, H.669, G.698, G.699, T.700, F.716, G.717, S.720, V.725 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:V.622, A:V.622, A:I.666, A:F.716, A:F.716, A:V.725 Hydrogen bonds: A:E.614, A:S.616, A:S.616, A:V.617, A:G.618, A:S.668, A:S.668, A:H.669, A:G.699, A:T.700 Metal complexes: A:H.615

1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.2: 2 residues within 4Å: Chain A: K.626, H.627 No protein-ligand interaction detected (PLIP)

1 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)

5AD.3: 3 residues within 4Å: Chain A: E.121, P.124, L.486 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wolthers, K.R. et al., Large-scale domain dynamics and adenosylcobalamin reorientation orchestrate radical catalysis in ornithine 4,5-aminomutase. J.Biol.Chem. (2010)

Release Date

2010-01-26

Peptides

D-ornithine aminomutase E component: A
D-ornithine aminomutase S component: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
H

D-ornithine aminomutase E component

D-ornithine aminomutase S component

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