SMTL ID : 3kp0.1 (5 other biounits)

Crystal Structure of ORNITHINE 4,5 AMINOMUTASE in complex with 2,4-diaminobutyrate (DAB) (Aerobic)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)

5AD.1: 4 residues within 4Å: Chain A: E.121, P.124, L.486, D.487 No protein-ligand interaction detected (PLIP)

1 x Z98: (2S)-2-amino-4-{[(1Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}butanoic acid(Non-covalent)

Z98.2: 14 residues within 4Å: Chain A: E.81, R.109, Q.113, S.114, Y.160, S.162, H.182, Y.187, R.192, G.220, H.222, N.223, R.294, Q.296 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.160, A:Y.160, A:H.182, A:Y.187 Hydrogen bonds: A:S.114, A:S.114, A:Y.160, A:S.162, A:H.182, A:Y.187, A:R.192, A:R.192, A:N.223, A:R.294, A:R.294, A:Q.296 Salt bridges: A:R.109, A:R.294 pi-Stacking: A:Y.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wolthers, K.R. et al., Large-scale domain dynamics and adenosylcobalamin reorientation orchestrate radical catalysis in ornithine 4,5-aminomutase. J.Biol.Chem. (2010)

Release Date

2010-01-26

Peptides

D-ornithine aminomutase E component: A
D-ornithine aminomutase S component: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

D-ornithine aminomutase E component

D-ornithine aminomutase S component

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