SMTL ID : 3krc.1 (2 other biounits)

Mint heterotetrameric geranyl pyrophosphate synthase in complex with IPP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)

IPE.1: 8 residues within 4Å: Chain A: G.43, K.44, R.47, H.76, R.95, K.180, T.181, Q.218 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.44 Water bridges: A:R.45, A:R.45, A:R.47, A:R.47, A:R.47 Salt bridges: A:R.47, A:H.76, A:H.76, A:R.95 IPE.3: 7 residues within 4Å: Chain D: K.44, R.47, H.76, R.95, K.180, T.181, F.217 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:K.44 Water bridges: D:K.44, D:R.45, D:R.47, D:R.95 Salt bridges: D:K.44, D:K.44, D:R.47, D:H.76, D:H.76, D:R.95

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain C: I.12, A.41, T.42, S.45, T.46, H.70 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.42, C:T.46, C:H.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, T.-H. et al., Structure of a heterotetrameric geranyl pyrophosphate synthase from mint (Mentha piperita) reveals intersubunit regulation. Plant Cell (2010)

Release Date

2010-02-23

Peptides

Geranyl diphosphate synthase large subunit: AD
Geranyl diphosphate synthase small subunit: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

C
C

Geranyl diphosphate synthase large subunit

Geranyl diphosphate synthase small subunit

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