SMTL ID : 3kze.1

Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ in Complex With SSRKEYYA Peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

2 x SER- ARG- LYS- GLU- TYR- TYR- ALA: Synthetic Peptide(Non-covalent)

SER-ARG-LYS-GLU-TYR-TYR-ALA.1: 18 residues within 4Å: Chain A: E.13, K.14, P.82, S.83 Chain B: T.21, Y.22, G.23, F.24, S.25, L.26, S.27, S.28, V.29, E.30, N.40, S.72, L.75, L.79 20 PLIP interactions: 19 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.24, B:E.30, B:L.75, B:L.79, B:L.79 Hydrogen bonds: B:Y.22, B:G.23, B:F.24, B:F.24, B:S.25, B:L.26, B:L.26, B:S.27, B:S.28, B:S.28, B:E.30, B:N.40, A:P.82 Water bridges: B:D.20, B:L.79 SER-ARG-LYS-GLU-TYR-TYR-ALA.2: 14 residues within 4Å: Chain C: T.21, Y.22, G.23, F.24, S.25, L.26, S.27, S.28, V.29, N.40, S.72, L.75, K.76, L.79 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:Y.22, C:F.24, C:L.75, C:L.79, C:L.79 Hydrogen bonds: C:Y.22, C:G.23, C:F.24, C:F.24, C:L.26, C:L.26, C:S.28, C:N.40, C:K.76, C:K.76, C:L.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shepherd, T.R. et al., The Tiam1 PDZ domain couples to Syndecan1 and promotes cell-matrix adhesion. J.Mol.Biol. (2010)

Release Date

2010-04-21

Peptides

T-lymphoma invasion and metastasis-inducing protein 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

T-lymphoma invasion and metastasis-inducing protein 1

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