SMTL ID : 3kzs.1 (3 other biounits)

Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.200, R.223, H.275 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.200, A:R.223, A:R.223 Salt bridges: A:R.200, A:R.223, A:H.275 SO4.2: 3 residues within 4Å: Chain A: G.91, Y.92, Q.142 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.92, A:Q.142 Water bridges: A:N.93, A:N.93 SO4.3: 4 residues within 4Å: Chain A: S.131, S.134, H.135, R.198 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.134 Water bridges: A:S.131, A:S.134 Salt bridges: A:H.135, A:R.198 SO4.4: 6 residues within 4Å: Chain A: R.223, R.228, F.229, G.230, D.233, Y.234 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.229, A:G.230, A:D.233 Salt bridges: A:R.223, A:R.228 SO4.5: 2 residues within 4Å: Chain A: R.169, R.198 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.169, A:R.200 Salt bridges: A:R.198 SO4.6: 2 residues within 4Å: Chain A: Y.83, Q.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.85

3 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.7: 8 residues within 4Å: Chain A: L.44, Q.72, W.129, M.310, Q.311, A.320, Y.321 Ligands: MRD.8 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.320, A:Y.321 Hydrogen bonds: A:Q.72, A:W.129 MRD.8: 7 residues within 4Å: Chain A: W.43, D.167, Q.219, H.222, E.264, Y.321 Ligands: MRD.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.219, A:E.264 MRD.9: 1 residues within 4Å: Chain A: I.82 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution. To be published

Release Date

2010-12-29

Peptides

glycosyl hydrolase family 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

glycosyl hydrolase family 5

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