SMTL ID : 3kzw.1 (1 other biounit)

Crystal structure of cytosol aminopeptidase from Staphylococcus aureus COL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-hexamer

Ligands

34 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 7 residues within 4Å: Chain A: P.45, E.46, H.47, Q.50, G.101, N.102, L.103 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: T.352 Ligand excluded by PLIP CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: A.366, E.367, G.368, R.369, L.393 Ligand excluded by PLIP CL.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: K.77, V.78, G.101 Ligand excluded by PLIP CL.10: 7 residues within 4Å: Chain B: P.45, E.46, H.47, Q.50, G.101, N.102, L.103 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain B: T.352 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain B: E.357 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain B: A.366, E.367, G.368, R.369, L.393 Ligand excluded by PLIP CL.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain C: K.77, V.78 Ligand excluded by PLIP CL.17: 7 residues within 4Å: Chain C: P.45, E.46, H.47, Q.50, G.101, N.102, L.103 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain C: V.350, T.352 Ligand excluded by PLIP CL.19: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.20: 5 residues within 4Å: Chain C: A.366, E.367, G.368, R.369, L.393 Ligand excluded by PLIP CL.21: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.23: 2 residues within 4Å: Chain D: K.77, V.78 Ligand excluded by PLIP CL.24: 6 residues within 4Å: Chain D: E.46, H.47, Q.50, G.101, N.102, L.103 Ligand excluded by PLIP CL.25: 1 residues within 4Å: Chain D: T.352 Ligand excluded by PLIP CL.26: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.27: 5 residues within 4Å: Chain D: A.366, E.367, G.368, R.369, L.393 Ligand excluded by PLIP CL.28: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.32: 2 residues within 4Å: Chain E: K.77, V.78 Ligand excluded by PLIP CL.33: 5 residues within 4Å: Chain E: P.45, E.46, H.47, Q.50, L.103 Ligand excluded by PLIP CL.34: 1 residues within 4Å: Chain E: T.352 Ligand excluded by PLIP CL.35: 1 residues within 4Å: Chain E: E.357 Ligand excluded by PLIP CL.36: 5 residues within 4Å: Chain E: A.366, E.367, G.368, R.369, L.393 Ligand excluded by PLIP CL.37: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.40: 7 residues within 4Å: Chain F: P.45, E.46, H.47, Q.50, G.101, N.102, L.103 Ligand excluded by PLIP CL.41: 2 residues within 4Å: Chain F: V.350, T.352 Ligand excluded by PLIP CL.42: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.43: 5 residues within 4Å: Chain F: A.366, E.367, G.368, R.369, L.393 Ligand excluded by PLIP CL.44: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

9 x NA: SODIUM ION(Non-functional Binders)

NA.6: 4 residues within 4Å: Chain A: S.411, T.470, S.473, G.474 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.411, A:S.473 NA.7: 4 residues within 4Å: Chain A: D.403, A.484, G.485, T.488 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.485, A:T.488 NA.15: 4 residues within 4Å: Chain B: D.403, A.484, G.485, T.488 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.488, B:T.488 NA.22: 4 residues within 4Å: Chain C: S.411, T.470, S.473, G.474 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.411, C:N.412 NA.29: 4 residues within 4Å: Chain D: S.411, T.470, S.473, G.474 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.411, D:S.473 NA.30: 4 residues within 4Å: Chain D: D.403, A.484, G.485, T.488 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.488, D:T.488 NA.38: 6 residues within 4Å: Chain E: S.411, N.412, T.470, S.473, G.474, T.476 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:T.476 Water bridges: E:S.411 NA.39: 4 residues within 4Å: Chain E: D.403, A.484, G.485, T.488 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:T.488 NA.45: 4 residues within 4Å: Chain F: D.403, A.484, G.485, T.488 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:A.484 Water bridges: F:A.487

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.8: 6 residues within 4Å: Chain A: N.341, E.342 Chain B: N.341, E.342 Chain C: N.341, E.342 9 PLIP interactions: 2 interactions with chain C, 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: C:N.341, C:E.342, A:N.341, A:E.342, A:E.342, B:N.341, B:E.342, B:E.342 Water bridges: A:E.342 PO4.31: 6 residues within 4Å: Chain D: N.341, E.342 Chain E: N.341, E.342 Chain F: N.341, E.342 8 PLIP interactions: 3 interactions with chain F, 3 interactions with chain D, 2 interactions with chain E Hydrogen bonds: F:N.341, F:E.342, F:E.342, D:N.341, D:E.342, D:E.342, E:N.341, E:E.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

 - 

Release Date

2010-01-12

Peptides

Cytosol aminopeptidase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Cytosol aminopeptidase

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