SMTL ID : 3kzw.2 (1 other biounit)

Crystal structure of cytosol aminopeptidase from Staphylococcus aureus COL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-hexamer

Ligands

33 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: P.45, E.46, H.47, G.101, N.102, L.103 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: T.352 Ligand excluded by PLIP CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: A.366, E.367, G.368, R.369, L.393 Ligand excluded by PLIP CL.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: K.77, V.78, G.101 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain B: P.45, E.46, H.47, G.101, N.102, L.103 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain B: V.350, T.352 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain B: H.471 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain B: A.366, E.367, G.368, R.369, L.393 Ligand excluded by PLIP CL.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain C: K.77, V.78 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain C: H.47, Q.50, N.102, L.103 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain C: V.350, T.352 Ligand excluded by PLIP CL.20: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.21: 5 residues within 4Å: Chain C: A.366, E.367, G.368, R.369, L.393 Ligand excluded by PLIP CL.22: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.24: 2 residues within 4Å: Chain D: K.77, V.78 Ligand excluded by PLIP CL.25: 5 residues within 4Å: Chain D: E.46, H.47, Q.50, N.102, L.103 Ligand excluded by PLIP CL.26: 2 residues within 4Å: Chain D: V.350, T.352 Ligand excluded by PLIP CL.27: 5 residues within 4Å: Chain D: A.366, E.367, G.368, R.369, L.393 Ligand excluded by PLIP CL.28: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.31: 2 residues within 4Å: Chain E: K.77, V.78 Ligand excluded by PLIP CL.32: 6 residues within 4Å: Chain E: P.45, E.46, H.47, G.101, N.102, L.103 Ligand excluded by PLIP CL.33: 1 residues within 4Å: Chain E: T.352 Ligand excluded by PLIP CL.34: 2 residues within 4Å: Chain E: E.357, F.377 Ligand excluded by PLIP CL.35: 5 residues within 4Å: Chain E: A.366, E.367, G.368, R.369, L.393 Ligand excluded by PLIP CL.36: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.39: 5 residues within 4Å: Chain F: P.45, E.46, H.47, Q.50, L.103 Ligand excluded by PLIP CL.40: 2 residues within 4Å: Chain F: V.350, T.352 Ligand excluded by PLIP CL.41: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.42: 5 residues within 4Å: Chain F: A.366, E.367, G.368, R.369, L.393 Ligand excluded by PLIP CL.43: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

10 x NA: SODIUM ION(Non-functional Binders)

NA.6: 6 residues within 4Å: Chain A: S.411, N.412, T.470, S.473, G.474, T.476 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.411, A:T.470 NA.7: 4 residues within 4Å: Chain A: D.403, A.484, G.485, T.488 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.403 NA.15: 4 residues within 4Å: Chain B: S.411, T.470, S.473, G.474 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.411, B:S.473 Water bridges: B:Q.475 NA.16: 4 residues within 4Å: Chain B: D.403, A.484, G.485, T.488 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.488, B:T.488 Water bridges: B:A.487 NA.23: 6 residues within 4Å: Chain C: S.411, N.412, T.470, S.473, G.474, T.476 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.412 Water bridges: C:S.411 NA.29: 6 residues within 4Å: Chain D: S.411, N.412, T.470, S.473, G.474, T.476 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.411, D:S.411 NA.37: 7 residues within 4Å: Chain E: S.411, N.412, T.470, S.473, G.474, Q.475, T.476 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:S.411 NA.38: 3 residues within 4Å: Chain E: D.403, G.485, T.488 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:T.488, E:T.488 NA.44: 6 residues within 4Å: Chain F: S.411, N.412, T.470, S.473, G.474, T.476 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:S.411 NA.45: 4 residues within 4Å: Chain F: D.403, A.484, G.485, T.488 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:T.488

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.8: 6 residues within 4Å: Chain A: N.341, E.342 Chain B: N.341, E.342 Chain C: N.341, E.342 8 PLIP interactions: 3 interactions with chain B, 3 interactions with chain C, 2 interactions with chain A Hydrogen bonds: B:N.341, B:E.342, B:E.342, C:N.341, C:E.342, C:E.342, A:N.341, A:E.342 PO4.30: 6 residues within 4Å: Chain D: N.341, E.342 Chain E: N.341, E.342 Chain F: N.341, E.342 9 PLIP interactions: 2 interactions with chain D, 4 interactions with chain E, 3 interactions with chain F Hydrogen bonds: D:N.341, D:E.342, E:N.341, E:E.342, E:E.342, E:E.342, F:N.341, F:E.342, F:E.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

 - 

Release Date

2010-01-12

Peptides

Cytosol aminopeptidase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

D
J

E
K

F
L

Cytosol aminopeptidase

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