SMTL ID : 3l3l.2 (1 other biounit)

PARP complexed with A906894

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-hexamer

Ligands

6 x L3L: 3-oxo-2-piperidin-4-yl-2,3-dihydro-1H-isoindole-4-carboxamide(Non-covalent)

L3L.1: 10 residues within 4Å: Chain A: H.201, G.202, G.227, Y.228, Y.235, F.236, K.242, S.243, Y.246, E.327 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.235, A:K.242, A:Y.246, A:E.327 Hydrogen bonds: A:G.202, A:G.202 Water bridges: A:Y.228, A:Y.235 L3L.2: 10 residues within 4Å: Chain B: H.201, G.202, G.227, Y.228, Y.235, F.236, K.242, S.243, Y.246, E.327 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.235, B:K.242, B:Y.246, B:E.327 Hydrogen bonds: B:G.202, B:G.202 Water bridges: B:Y.228, B:Y.235 L3L.3: 10 residues within 4Å: Chain C: H.201, G.202, G.227, Y.228, Y.235, F.236, K.242, S.243, Y.246, E.327 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:Y.235, C:K.242, C:Y.246, C:E.327 Hydrogen bonds: C:G.202, C:G.202 Water bridges: C:Y.228, C:Y.235 L3L.4: 10 residues within 4Å: Chain D: H.201, G.202, G.227, Y.228, Y.235, F.236, K.242, S.243, Y.246, E.327 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:Y.235, D:K.242, D:Y.246, D:E.327 Hydrogen bonds: D:G.202, D:G.202 Water bridges: D:Y.228, D:Y.235 L3L.5: 10 residues within 4Å: Chain E: H.201, G.202, G.227, Y.228, Y.235, F.236, K.242, S.243, Y.246, E.327 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:Y.235, E:K.242, E:Y.246, E:E.327 Hydrogen bonds: E:G.202, E:G.202 Water bridges: E:Y.228, E:Y.235 L3L.6: 10 residues within 4Å: Chain F: H.201, G.202, G.227, Y.228, Y.235, F.236, K.242, S.243, Y.246, E.327 8 PLIP interactions: 8 interactions with chain F Hydrophobic interactions: F:Y.235, F:K.242, F:Y.246, F:E.327 Hydrogen bonds: F:G.202, F:G.202 Water bridges: F:Y.228, F:Y.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gandhi, V.B. et al., Discovery and SAR of substituted 3-oxoisoindoline-4-carboxamides as potent inhibitors of poly(ADP-ribose) polymerase (PARP) for the treatment of cancer. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-12-22

Peptides

Poly [ADP-ribose] polymerase 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Poly [ADP-ribose] polymerase 1

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