SMTL ID : 3l7i.1 (2 other biounits)

Structure of the Wall Teichoic Acid Polymerase TagF

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.320, R.324 Chain B: K.327, R.333 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Salt bridges: B:K.327, B:R.333, A:R.320 Hydrogen bonds: A:R.324 SO4.2: 4 residues within 4Å: Chain A: K.327, R.333 Chain B: R.320, R.324 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Salt bridges: A:K.327, A:R.333, B:R.320 Hydrogen bonds: B:R.324 SO4.3: 6 residues within 4Å: Chain A: K.449, T.546, Y.623, S.624, S.625 Ligands: CL.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.624, A:S.625 SO4.16: 5 residues within 4Å: Chain B: K.449, T.546, Y.623, S.624, S.625 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.625, B:S.625 SO4.24: 3 residues within 4Å: Chain C: K.327, R.333 Chain D: R.320 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Salt bridges: C:K.327, C:R.333, D:R.320 Hydrogen bonds: D:R.324 SO4.25: 5 residues within 4Å: Chain C: K.449, T.546, Y.623, S.624, S.625 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.625 SO4.33: 4 residues within 4Å: Chain C: R.320 Chain D: K.327, R.333 Ligands: EDO.27 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:R.324 Salt bridges: C:R.320, D:K.327, D:R.333 SO4.34: 5 residues within 4Å: Chain D: K.449, T.546, Y.623, S.624, S.625 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.624, D:S.625

26 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: K.351, P.352, K.353 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: N.391, P.392, D.393 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: A.425, R.426, W.443 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: W.443, H.444, G.445 Ligands: SO4.3 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: R.324, N.328 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain A: N.471 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: K.315, V.316 Chain C: A.313 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: K.433, R.478 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: Y.488, R.697 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain A: E.561, L.562, L.566, L.591 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain A: A.313 Chain C: V.316 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain A: Y.380, P.381, N.382 Ligand excluded by PLIP CL.18: 6 residues within 4Å: Chain B: Q.318, F.319, T.322 Chain D: Q.318, F.319, T.322 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain B: K.351, P.352, K.353 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain B: N.391, D.393, K.405 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain B: E.561, L.562, L.566 Ligand excluded by PLIP CL.22: 1 residues within 4Å: Chain B: R.582 Ligand excluded by PLIP CL.23: 4 residues within 4Å: Chain B: N.395, V.396, V.397, K.403 Ligand excluded by PLIP CL.28: 3 residues within 4Å: Chain C: K.351, P.352, K.353 Ligand excluded by PLIP CL.29: 3 residues within 4Å: Chain C: N.391, P.392, D.393 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain C: R.324, N.328, N.335 Ligand excluded by PLIP CL.31: 3 residues within 4Å: Chain C: L.431, K.433, R.478 Ligand excluded by PLIP CL.32: 1 residues within 4Å: Chain C: R.697 Ligand excluded by PLIP CL.37: 3 residues within 4Å: Chain D: K.351, P.352, K.353 Ligand excluded by PLIP CL.38: 3 residues within 4Å: Chain D: N.391, P.392, D.393 Ligand excluded by PLIP CL.39: 1 residues within 4Å: Chain D: R.582 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.17: 4 residues within 4Å: Chain B: A.425, R.426, W.443, F.472 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.426, B:R.426 EDO.26: 5 residues within 4Å: Chain C: A.425, R.426, W.443, Y.468, F.472 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.426, C:Y.468, C:Y.468 EDO.27: 4 residues within 4Å: Chain C: R.324, K.327 Ligands: SO4.33, EDO.35 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:K.327, D:K.327, C:R.324 EDO.35: 4 residues within 4Å: Chain C: K.327 Chain D: R.324, K.327 Ligands: EDO.27 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:R.324, D:K.327, C:K.327 EDO.36: 3 residues within 4Å: Chain D: A.425, R.426, W.443 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.426, D:R.426

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovering, A.L. et al., Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-04-28

Peptides

Teichoic acid biosynthesis protein F: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Teichoic acid biosynthesis protein F

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