SMTL ID : 3l95.1 (1 other biounit)

Crystal structure of the human Notch1 Negative Regulatory Region (NRR) bound to the fab fragment of an antagonist antibody

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-1-2-2-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain C: K.43, N.44, S.202, T.204, D.205 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain B: F.27, T.28, Y.32 Chain C: G.1, S.2 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:S.2, C:S.2, B:T.28, B:Y.32

6 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain C: D.12, N.15, V.17, D.30, D.33 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.12, C:V.17, C:D.30, C:D.33 CA.4: 6 residues within 4Å: Chain C: Y.54, D.57, H.59, D.61, D.72, D.75 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:Y.54, C:D.57, C:H.59, C:D.61, C:D.75 CA.5: 6 residues within 4Å: Chain C: H.94, D.97, H.99, D.101, D.112, D.115 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:H.94, C:D.97, C:H.99, C:D.101, C:D.115 CA.6: 5 residues within 4Å: Chain E: N.15, V.17, S.19, D.30, D.33 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:V.17, E:S.19, E:D.30 CA.7: 6 residues within 4Å: Chain E: Y.54, D.57, H.59, D.61, D.72, D.75 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:Y.54, E:H.59, E:D.61, E:D.72, E:D.75 CA.8: 6 residues within 4Å: Chain E: H.94, D.97, H.99, D.101, D.112, D.115 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:H.94, E:D.97, E:H.99, E:D.101, E:D.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Therapeutic antibody targeting of individual Notch receptors. Nature (2010)

Release Date

2010-03-09

Peptides

anti-NRR1 fab fragment light chain: A
anti-NRR1 fab fragment heavy chain: BD
Neurogenic locus notch homolog protein 1: CE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
H

C
X

E
Y

anti-NRR1 fab fragment light chain

anti-NRR1 fab fragment heavy chain

Neurogenic locus notch homolog protein 1

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