SMTL ID : 3l95.2 (1 other biounit)

Crystal structure of the human Notch1 Negative Regulatory Region (NRR) bound to the fab fragment of an antagonist antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-2-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: K.43, N.44, S.202, T.204, D.205 No protein-ligand interaction detected (PLIP)

6 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.12, N.15, V.17, D.30, D.33 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.12, A:V.17, A:D.30, A:D.33 CA.3: 6 residues within 4Å: Chain A: Y.54, D.57, H.59, D.61, D.72, D.75 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:Y.54, A:D.57, A:H.59, A:D.61, A:D.75 CA.4: 6 residues within 4Å: Chain A: H.94, D.97, H.99, D.101, D.112, D.115 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.94, A:D.97, A:H.99, A:D.101, A:D.115 CA.5: 5 residues within 4Å: Chain D: N.15, V.17, S.19, D.30, D.33 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:V.17, D:S.19, D:D.30 CA.6: 6 residues within 4Å: Chain D: Y.54, D.57, H.59, D.61, D.72, D.75 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:Y.54, D:H.59, D:D.61, D:D.72, D:D.75 CA.7: 6 residues within 4Å: Chain D: H.94, D.97, H.99, D.101, D.112, D.115 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:H.94, D:D.97, D:H.99, D:D.101, D:D.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Therapeutic antibody targeting of individual Notch receptors. Nature (2010)

Release Date

2010-03-09

Peptides

Neurogenic locus notch homolog protein 1: AD
anti-NRR1 fab fragment light chain: B
anti-NRR1 fab fragment heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

D
Y

B
L

C
H

Neurogenic locus notch homolog protein 1

anti-NRR1 fab fragment light chain

anti-NRR1 fab fragment heavy chain

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