SMTL ID : 3l9i.1

Myosin VI nucleotide-free (mdinsert2) L310G mutant crystal structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TBU: TERTIARY-BUTYL ALCOHOL(Non-functional Binders)

TBU.1: 8 residues within 4Å: Chain A: R.204, F.205, G.206, L.228, E.230, I.456, I.472, F.646 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.456, A:I.472, A:F.646

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: S.149, N.476, Q.480, F.483, F.581, R.666, S.691 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:N.476, A:F.581 Hydrogen bonds: A:N.476 Water bridges: A:R.666, A:R.666 Salt bridges: A:R.666 ACT.7: 6 residues within 4Å: Chain A: T.157, T.160, L.164, V.182, N.185, K.207 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.160, A:L.164, A:V.182 Hydrogen bonds: A:T.157 Water bridges: A:K.207 Salt bridges: A:K.207

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 3 residues within 4Å: Chain A: K.77, V.78, S.81 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.81 Water bridges: A:K.77 PO4.4: 6 residues within 4Å: Chain A: S.143, H.212, S.447, S.448, Y.449, F.450 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.143 Water bridges: A:S.447, A:S.447 Salt bridges: A:H.212 PO4.5: 4 residues within 4Å: Chain A: R.198, Y.461, F.462, E.463 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.198, A:R.198, A:E.463 Salt bridges: A:R.198 PO4.6: 3 residues within 4Å: Chain A: H.10, P.11, T.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.12, A:T.12 Salt bridges: A:H.10

4 x CA: CALCIUM ION(Non-covalent)

CA.8: 5 residues within 4Å: Chain B: D.21, D.23, D.25, T.27, E.32 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.21, B:D.23, B:D.25, B:T.27, B:E.32 CA.9: 5 residues within 4Å: Chain B: D.57, D.59, N.61, T.63, E.68 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.57, B:D.59, B:T.63, B:E.68, B:E.68 CA.10: 6 residues within 4Å: Chain B: D.130, D.132, D.134, Q.136, N.138, E.141 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.130, B:D.134, B:Q.136, B:E.141, B:E.141 CA.11: 5 residues within 4Å: Chain B: D.94, D.96, N.98, F.100, E.105 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.94, B:D.96, B:F.100, B:E.105, B:E.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pylypenko, O. et al., Role of insert i of myosin VI in modulating nucleotide affinity. To be Published

Release Date

2010-12-08

Peptides

Myosin-VI: A
Calmodulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Myosin-VI

Calmodulin

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