SMTL ID : 4dbq.1

MYOSIN VI D179Y (MD-INSERT2-CAM, DELTA-INSERT1) post-rigor state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 20 residues within 4Å: Chain A: I.85, N.97, P.98, Y.99, F.100, D.101, Y.106, E.151, S.152, G.153, A.154, G.155, K.156, T.157, E.158, F.162, N.199, N.201 Ligands: BEF.2, MG.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:N.97, A:Y.106, A:Y.106, A:G.153, A:A.154, A:G.155, A:K.156, A:T.157, A:E.158, A:E.158, A:N.199, A:N.201 Water bridges: A:D.101, A:S.203, A:S.203, A:S.203 Salt bridges: A:K.156

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 8 residues within 4Å: Chain A: S.152, G.153, K.156, N.199, S.202, S.203 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: T.157, S.203 Ligands: ADP.1, BEF.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.157, A:S.203, H2O.1, H2O.1

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: S.512, Q.514, H.515, S.518 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.512, A:S.512, A:S.518 Salt bridges: A:H.515 SO4.5: 3 residues within 4Å: Chain A: E.306, R.411, Q.414 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.414 Salt bridges: A:R.411 SO4.10: 5 residues within 4Å: Chain A: W.771, L.774 Chain B: Q.9, S.82, I.86 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:K.778 Hydrogen bonds: B:Q.9

4 x CA: CALCIUM ION(Non-covalent)

CA.6: 5 residues within 4Å: Chain B: D.21, D.23, D.25, T.27, E.32 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.21, B:D.23, B:D.23, B:D.25, B:T.27 CA.7: 6 residues within 4Å: Chain B: D.57, D.59, N.61, T.63, I.64, E.68 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.57, B:D.59, B:T.63, B:E.68, H2O.15 CA.8: 5 residues within 4Å: Chain B: D.94, D.96, N.98, F.100, E.105 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.94, B:D.96, B:E.105, B:E.105, H2O.14 CA.9: 5 residues within 4Å: Chain B: D.130, D.132, D.134, Q.136, E.141 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.130, B:Q.136, B:E.141, B:E.141, H2O.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, L. et al., Mutations in myosin VI that cause a loss of coordination between heads provide insights into the structural changes underlying force generation and the importance of gating. To be Published

Release Date

2013-01-30

Peptides

Myosin-VI: A
Calmodulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Myosin-VI

Calmodulin

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