SMTL ID : 3lgb.1 (1 other biounit)

Crystal Structure of the Fe-S Domain of the yeast DNA primase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 11 residues within 4Å: Chain A: P.19, C.21, C.99, I.102, C.116, P.117, F.118, Y.152, T.153, C.156, P.182 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.21, A:C.99, A:C.116, A:C.156

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 6 residues within 4Å: Chain A: R.107, R.119, G.150, E.151, Y.152, T.153 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.107, A:Y.152, A:Y.152, A:T.153 Water bridges: A:R.107, A:T.153, A:I.154 EPE.3: 7 residues within 4Å: Chain A: H.83, E.88, G.89, N.90, R.91, I.92, Y.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.90, A:N.90, A:R.91, A:Y.94, A:Y.94 Salt bridges: A:H.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sauguet, L. et al., Shared Active Site Architecture between the Large Subunit of Eukaryotic Primase and DNA Photolyase. PLOS ONE (2010)

Release Date

2010-04-21

Peptides

DNA primase large subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA primase large subunit

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