SMTL ID : 3lgb.2 (1 other biounit)

Crystal Structure of the Fe-S Domain of the yeast DNA primase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 11 residues within 4Å: Chain A: P.19, C.21, C.99, I.102, C.116, P.117, F.118, Y.152, T.153, C.156, P.182 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.21, A:C.99, A:C.116, A:C.156

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: K.30, H.33 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:H.33, H2O.4, H2O.6, H2O.6, H2O.6, H2O.6 ZN.3: 1 residues within 4Å: Chain A: E.71 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.71, A:E.71

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: L.58, K.59, S.62, M.70, R.78 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.78, A:R.78 Water bridges: A:K.59, A:S.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sauguet, L. et al., Shared Active Site Architecture between the Large Subunit of Eukaryotic Primase and DNA Photolyase. PLOS ONE (2010)

Release Date

2010-04-21

Peptides

DNA primase large subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA primase large subunit

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