SMTL ID : 3lgd.1

Crystal structure of human adenosine deaminase growth factor, adenosine deaminase type 2 (ADA2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: W.97, N.101, R.105, D.200 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.101, A:R.105 Water bridges: A:N.101, A:N.101, A:D.200, A:D.200, A:R.204 NAG.2: 4 residues within 4Å: Chain A: F.112, S.155, R.158, N.159 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.155, A:R.158, A:N.159 NAG.3: 5 residues within 4Å: Chain A: M.316, A.319, L.351, N.352 Chain B: I.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.351 Hydrogen bonds: A:N.352 Water bridges: A:A.319 NAG.7: 4 residues within 4Å: Chain B: W.97, N.101, R.105, D.200 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.105 Water bridges: B:N.101, B:R.204 NAG.8: 6 residues within 4Å: Chain B: G.116, R.158, N.159, T.161, K.180, I.184 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.180 Water bridges: B:N.159, B:N.159, B:N.159, B:Y.171 NAG.9: 7 residues within 4Å: Chain A: I.4 Chain B: L.315, M.316, A.319, Y.327, L.351, N.352 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.327, B:L.351 Hydrogen bonds: B:N.352 Water bridges: B:A.319

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 6 residues within 4Å: Chain A: H.86, H.88, H.330, H.358, D.415 Ligands: UNX.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.86, A:H.88, A:H.330, A:D.415 ZN.10: 6 residues within 4Å: Chain B: H.86, H.88, H.330, H.358, D.415 Ligands: UNX.12 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.86, B:H.88, B:H.330, B:D.415

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 7 residues within 4Å: Chain A: H.107, H.109, A.123, H.124, P.125, T.126, L.138 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.107, A:H.124, A:T.126, A:T.126 EDO.11: 7 residues within 4Å: Chain B: H.107, H.109, A.123, H.124, P.125, T.126, L.138 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.107, B:T.126, B:T.126

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.6: 6 residues within 4Å: Chain A: H.88, H.330, E.333, H.358, D.415 Ligands: ZN.4 No protein-ligand interaction detected (PLIP) UNX.12: 6 residues within 4Å: Chain B: H.88, H.330, E.333, H.358, D.415 Ligands: ZN.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zavialov, A.V. et al., Structural basis for the growth factor activity of human adenosine deaminase ADA2. J.Biol.Chem. (2010)

Release Date

2010-02-09

Peptides

Adenosine deaminase CECR1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Adenosine deaminase CECR1

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