SMTL ID : 3lgg.1

Crystal structure of human adenosine deaminase growth factor, adenosine deaminase type 2 (ADA2) complexed with transition state analogue, coformycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: W.97, N.101, R.105, D.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.105 Water bridges: A:N.101 NAG.2: 3 residues within 4Å: Chain A: S.155, R.158, N.159 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.155, A:N.159 Water bridges: A:N.159, A:N.159 NAG.3: 5 residues within 4Å: Chain A: M.316, A.319, L.351, N.352 Chain B: I.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.351 Hydrogen bonds: A:N.352 NAG.6: 4 residues within 4Å: Chain B: W.97, N.101, R.105, D.200 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:R.105 Hydrogen bonds: B:R.105 NAG.7: 6 residues within 4Å: Chain B: G.116, R.158, N.159, T.161, K.180, I.184 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.159, B:K.180 Water bridges: B:N.159, B:N.159, B:Y.171 NAG.8: 5 residues within 4Å: Chain A: I.4 Chain B: M.316, A.319, L.351, N.352 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.351 Hydrogen bonds: B:N.352

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 6 residues within 4Å: Chain A: H.86, H.88, H.330, H.358, D.415 Ligands: CFE.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.86, A:H.88, A:H.330, A:D.415 ZN.9: 6 residues within 4Å: Chain B: H.86, H.88, H.330, H.358, D.415 Ligands: CFE.10 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.86, B:H.88, B:H.330, B:D.415

2 x CFE: (8R)-3-beta-D-ribofuranosyl-3,6,7,8-tetrahydroimidazo[4,5-d][1,3]diazepin-8-ol(Non-covalent)

CFE.5: 18 residues within 4Å: Chain A: H.86, H.88, D.89, W.178, F.181, E.182, F.185, R.222, H.267, V.299, G.300, H.330, E.333, H.358, L.389, D.415, D.416 Ligands: ZN.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.89, A:E.182, A:G.300, A:E.333 Water bridges: A:R.222 pi-Stacking: A:H.88 CFE.10: 18 residues within 4Å: Chain B: H.86, H.88, D.89, W.178, F.181, E.182, F.185, R.222, H.267, V.299, G.300, H.330, E.333, H.358, L.389, D.415, D.416 Ligands: ZN.9 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.89, B:E.182, B:G.300, B:E.333 pi-Stacking: B:H.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zavialov, A.V. et al., Structural basis for the growth factor activity of human adenosine deaminase ADA2. J.Biol.Chem. (2010)

Release Date

2010-02-09

Peptides

Adenosine deaminase CECR1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Adenosine deaminase CECR1

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