SMTL ID : 3lix.2 (1 other biounit)

crystal structure of htlv protease complexed with the inhibitor KNI-10729

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-12-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.65, H.66 Chain H: D.65, H.66 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain A Metal complexes: H:D.65, H:H.66, A:D.65, A:D.65 ZN.3: 4 residues within 4Å: Chain C: D.65, H.66 Chain L: D.65, H.66 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain C Metal complexes: L:D.65, L:H.66, C:D.65, C:D.65 ZN.5: 4 residues within 4Å: Chain E: D.65, H.66 Chain J: D.65, H.66 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain E Metal complexes: J:D.65, J:H.66, E:D.65, E:D.65 ZN.7: 4 residues within 4Å: Chain B: D.65, H.66 Chain G: D.65, H.66 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain G Metal complexes: B:D.65, B:H.66, G:D.65, G:D.65 ZN.9: 4 residues within 4Å: Chain F: D.65, H.66 Chain I: D.65, H.66 4 PLIP interactions: 2 interactions with chain I, 2 interactions with chain F Metal complexes: I:D.65, I:D.65, F:D.65, F:H.66 ZN.11: 4 residues within 4Å: Chain D: D.65, H.66 Chain K: D.65, H.66 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain K Metal complexes: D:D.65, D:H.66, K:D.65, K:D.65

6 x E17: N-{(1S,2S)-1-benzyl-3-[(4R)-5,5-dimethyl-4-{[(1R)-1,2,2-trimethylpropyl]carbamoyl}-1,3-thiazolidin-3-yl]-2-hydroxy-3-oxopropyl}-3-methyl-N~2~-{(2S)-2-[(morpholin-4-ylacetyl)amino]-2-phenylacetyl}-L-valinamide(Non-covalent)

E17.2: 24 residues within 4Å: Chain A: R.10, D.32, G.34, A.35, M.37, V.39, V.56, L.57, A.59, L.91, W.98, I.100 Chain B: R.10, L.30, D.32, G.34, A.35, D.36, M.37, V.56, L.57, G.58, A.59, Q.62 23 PLIP interactions: 14 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:L.30, B:V.56, B:L.57, B:L.57, B:A.59, A:A.35, A:V.39, A:V.56, A:A.59, A:W.98, A:W.98, A:I.100 Hydrogen bonds: B:D.32, B:G.34, B:G.34, B:D.36, B:D.36, B:D.36, B:L.57, B:L.57 Water bridges: B:A.59, A:A.59 pi-Cation interactions: A:R.10 E17.4: 24 residues within 4Å: Chain C: R.10, D.32, G.34, A.35, M.37, V.39, V.56, L.57, A.59, L.91, W.98, I.100 Chain D: R.10, L.30, D.32, G.34, A.35, D.36, M.37, V.56, L.57, G.58, A.59, Q.62 23 PLIP interactions: 9 interactions with chain C, 14 interactions with chain D Hydrophobic interactions: C:A.35, C:V.39, C:V.56, C:A.59, C:W.98, C:W.98, C:I.100, D:L.30, D:V.56, D:L.57, D:L.57, D:A.59 Water bridges: C:A.59, D:A.59 pi-Cation interactions: C:R.10 Hydrogen bonds: D:D.32, D:G.34, D:G.34, D:D.36, D:D.36, D:D.36, D:L.57, D:L.57 E17.6: 24 residues within 4Å: Chain E: R.10, D.32, G.34, A.35, M.37, V.39, V.56, L.57, A.59, L.91, W.98, I.100 Chain F: R.10, L.30, D.32, G.34, A.35, D.36, M.37, V.56, L.57, G.58, A.59, Q.62 23 PLIP interactions: 9 interactions with chain E, 14 interactions with chain F Hydrophobic interactions: E:A.35, E:V.39, E:V.56, E:A.59, E:W.98, E:W.98, E:I.100, F:L.30, F:V.56, F:L.57, F:L.57, F:A.59 Water bridges: E:A.59, F:A.59 pi-Cation interactions: E:R.10 Hydrogen bonds: F:D.32, F:G.34, F:G.34, F:D.36, F:D.36, F:D.36, F:L.57, F:L.57 E17.8: 24 residues within 4Å: Chain G: R.10, D.32, G.34, A.35, M.37, V.39, V.56, L.57, A.59, L.91, W.98, I.100 Chain H: R.10, L.30, D.32, G.34, A.35, D.36, M.37, V.56, L.57, G.58, A.59, Q.62 22 PLIP interactions: 13 interactions with chain H, 9 interactions with chain G Hydrophobic interactions: H:L.30, H:V.56, H:L.57, H:L.57, H:A.59, G:A.35, G:V.39, G:V.56, G:A.59, G:W.98, G:W.98, G:I.100 Hydrogen bonds: H:D.32, H:G.34, H:G.34, H:D.36, H:D.36, H:L.57, H:L.57 Water bridges: H:A.59, G:A.59 pi-Cation interactions: G:R.10 E17.10: 24 residues within 4Å: Chain I: R.10, D.32, G.34, A.35, M.37, V.39, V.56, L.57, A.59, L.91, W.98, I.100 Chain J: R.10, L.30, D.32, G.34, A.35, D.36, M.37, V.56, L.57, G.58, A.59, Q.62 22 PLIP interactions: 9 interactions with chain I, 13 interactions with chain J Hydrophobic interactions: I:A.35, I:V.39, I:V.56, I:A.59, I:W.98, I:W.98, I:I.100, J:L.30, J:V.56, J:L.57, J:L.57, J:A.59 Water bridges: I:A.59, J:A.59 pi-Cation interactions: I:R.10 Hydrogen bonds: J:D.32, J:G.34, J:G.34, J:D.36, J:D.36, J:L.57, J:L.57 E17.12: 24 residues within 4Å: Chain K: R.10, D.32, G.34, A.35, M.37, V.39, V.56, L.57, A.59, L.91, W.98, I.100 Chain L: R.10, L.30, D.32, G.34, A.35, D.36, M.37, V.56, L.57, G.58, A.59, Q.62 22 PLIP interactions: 13 interactions with chain L, 9 interactions with chain K Hydrophobic interactions: L:L.30, L:V.56, L:L.57, L:L.57, L:A.59, K:A.35, K:V.39, K:V.56, K:A.59, K:W.98, K:W.98, K:I.100 Hydrogen bonds: L:D.32, L:G.34, L:G.34, L:D.36, L:D.36, L:L.57, L:L.57 Water bridges: L:A.59, K:A.59 pi-Cation interactions: K:R.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Satoh, T. et al., Crystal structures of inhibitor complexes of human T-cell leukemia virus (HTLV-1) protease. J.Mol.Biol. (2010)

Release Date

2010-07-14

Peptides

Protease: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

I
A

J
B

K
A

L
B

Protease

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