SMTL ID : 3lka.1

Catalytic domain of human MMP-12 complexed with hydroxamic acid and paramethoxy-sulfonyl amide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.113, H.117, H.123 Ligands: HAE.6 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:H.113, A:H.117, A:H.123, H2O.6, HAE.6 ZN.2: 4 residues within 4Å: Chain A: H.63, D.65, H.78, H.91 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.63, A:D.65, A:H.78, A:H.91

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: A.52, D.53, G.85, I.86, G.87, D.89 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.53, A:G.85, A:G.87, A:D.89, H2O.1, H2O.5 CA.4: 4 residues within 4Å: Chain A: T.17, D.19, E.94, E.96 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.19, A:E.94, A:E.94, H2O.1, H2O.1 CA.5: 6 residues within 4Å: Chain A: D.70, G.71, G.73, I.75, D.93, E.96 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.70, A:G.71, A:G.73, A:I.75, A:D.93, A:E.96

1 x HAE: ACETOHYDROXAMIC ACID(Non-covalent)

HAE.6: 8 residues within 4Å: Chain A: A.77, H.78, H.113, E.114, H.117, H.123 Ligands: ZN.1, M4S.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.78 Hydrogen bonds: A:A.77

1 x M4S: 4-methoxybenzenesulfonamide(Non-covalent)

M4S.7: 11 residues within 4Å: Chain A: I.75, L.76, A.77, L.109, T.110, H.113, E.114, P.133, T.134, Y.135 Ligands: HAE.6 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.110, A:H.113, A:Y.135 Hydrogen bonds: A:L.76, A:A.77, A:P.133 Water bridges: A:Y.135 pi-Stacking: A:H.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borsi, V. et al., Entropic contribution to the linking coefficient in fragment based drug design: a case study. J.Med.Chem. (2010)

Release Date

2010-05-12

Peptides

Macrophage metalloelastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage metalloelastase

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