SMTL ID : 3loy.1 (1 other biounit)

Crystal structure of a Copper-containing benzylamine oxidase from Hansenula Polymorpha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.435, H.437, H.596 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.435, A:H.437, A:H.596, H2O.6, H2O.20 CU.7: 3 residues within 4Å: Chain B: H.435, H.437, H.596 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.435, B:H.437, B:H.596, H2O.47, H2O.56

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: L.37, Y.65, N.553, Y.556, E.560 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.67, A:N.553, A:Y.556 Water bridges: A:R.36, A:K.76, A:N.553, A:L.555, A:E.560 GOL.3: 5 residues within 4Å: Chain A: D.457, T.477, E.478, R.479, K.512 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.477, A:T.477, A:K.512, A:K.512 Water bridges: A:R.479, A:R.479, A:R.479, A:R.479, A:R.479, B:Y.434 GOL.4: 8 residues within 4Å: Chain A: Q.490, S.491, P.492, R.496, Y.498, M.520, A.522, Q.544 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.491, A:S.491 Water bridges: A:R.496, A:M.520 GOL.5: 7 residues within 4Å: Chain A: Q.350, V.375, Q.377, N.390, I.392, H.402, R.404 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.404 Water bridges: A:H.348, A:Q.350, A:Q.350, A:Q.350, A:Q.377, A:Q.377, A:R.400 GOL.8: 8 residues within 4Å: Chain B: Q.490, S.491, P.492, R.496, Y.498, M.520, A.522, Q.544 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.491, B:S.491 Water bridges: B:R.496, B:M.520 GOL.9: 5 residues within 4Å: Chain B: D.457, T.477, E.478, R.479, K.512 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.477, B:T.477, B:T.477 Water bridges: B:R.479, B:R.479, B:R.479, B:K.512, A:Y.434, A:Y.434, A:Y.434 GOL.11: 6 residues within 4Å: Chain B: Q.350, V.375, Q.377, N.390, I.392, R.404 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Q.350, B:Q.377, B:N.390, B:R.404 Water bridges: B:Q.377, B:H.402, B:R.404, B:R.404, B:R.404 GOL.12: 6 residues within 4Å: Chain A: R.461, F.493 Chain B: Q.524, M.525, L.526, L.527 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:M.525, B:L.526, A:R.461 Water bridges: B:Q.524, A:F.493, A:F.493

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.6: 3 residues within 4Å: Chain A: H.59, I.60, S.61 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.59, A:S.61 Water bridges: A:H.59, A:N.80 Salt bridges: A:H.59

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.10: 4 residues within 4Å: Chain B: D.531, S.532, Y.533, K.536 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.531, B:S.532 Water bridges: B:Y.533, B:Y.533, B:K.536 Salt bridges: B:K.536

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C.M. et al., Kinetic and structural analysis of substrate specificity in two copper amine oxidases from Hansenula polymorpha. Biochemistry (2010)

Release Date

2010-03-16

Peptides

copper amine oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

copper amine oxidase

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