SMTL ID : 3loy.2 (1 other biounit)

Crystal structure of a Copper-containing benzylamine oxidase from Hansenula Polymorpha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.435, H.437, H.596 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.435, A:H.437, A:H.596, H2O.1, H2O.10 CU.6: 3 residues within 4Å: Chain B: H.435, H.437, H.596 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.435, B:H.437, B:H.596, H2O.44, H2O.53

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: Q.490, S.491, P.492, R.496, Y.498, M.520, Q.544 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.491, A:Y.498, A:Q.544 Water bridges: A:P.492, A:N.495, A:R.496, A:R.496, A:M.520 GOL.4: 5 residues within 4Å: Chain A: D.457, T.477, E.478, R.479, K.512 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.477, A:T.477, A:K.512 Water bridges: A:R.479, A:R.479, A:R.479, A:R.479, B:Y.434 GOL.5: 4 residues within 4Å: Chain A: D.143, S.144, R.187, R.296 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.144, A:S.144 Water bridges: A:D.143, A:R.296, B:Y.471 GOL.7: 7 residues within 4Å: Chain B: Q.490, S.491, P.492, R.496, Y.498, M.520, Q.544 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.491, B:Q.544 Water bridges: B:P.492, B:N.495, B:R.496, B:R.496, B:M.520 GOL.9: 5 residues within 4Å: Chain B: D.457, T.477, E.478, R.479, K.512 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.477, B:T.477, B:K.512 Water bridges: B:R.479, B:R.479, B:R.479, B:R.479 GOL.10: 4 residues within 4Å: Chain B: D.143, S.144, R.187, R.296 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.144, B:S.144 Water bridges: B:D.143, B:R.296, A:Y.471

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.3: 3 residues within 4Å: Chain A: H.59, I.60, S.61 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.59, A:H.59, A:S.61 Water bridges: A:D.43 Salt bridges: A:H.59 TLA.8: 3 residues within 4Å: Chain B: H.59, I.60, S.61 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.59, B:H.59, B:S.61 Water bridges: B:D.43 Salt bridges: B:H.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C.M. et al., Kinetic and structural analysis of substrate specificity in two copper amine oxidases from Hansenula polymorpha. Biochemistry (2010)

Release Date

2010-03-16

Peptides

copper amine oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

copper amine oxidase

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