SMTL ID : 3lqk.1 (2 other biounits)

Crystal structure of dipicolinate synthase subunit B from Bacillus halodurans C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

12 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: T.15, G.16, T.43, T.96, N.98, S.99 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.16, A:T.96, A:N.98, A:S.99 PO4.2: 5 residues within 4Å: Chain A: E.79, P.83, R.121 Chain C: N.133, K.165 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:E.79, C:N.133 Salt bridges: A:R.121, C:K.165 Water bridges: C:N.133 PO4.3: 6 residues within 4Å: Chain B: T.15, G.16, T.43, T.96, N.98, S.99 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.16, B:T.96, B:N.98, B:S.99 PO4.4: 5 residues within 4Å: Chain A: N.133, K.165 Chain B: E.79, P.83, R.121 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.133, B:E.79 Water bridges: A:N.133 Salt bridges: A:K.165, B:R.121 PO4.5: 6 residues within 4Å: Chain C: T.15, G.16, T.43, T.96, N.98, S.99 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.16, C:T.96, C:N.98, C:S.99 PO4.6: 5 residues within 4Å: Chain B: N.133, K.165 Chain C: E.79, P.83, R.121 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:E.79, B:N.133 Salt bridges: C:R.121, B:K.165 Water bridges: B:N.133 PO4.7: 6 residues within 4Å: Chain D: T.15, G.16, T.43, T.96, N.98, S.99 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.16, D:N.98, D:S.99 PO4.8: 5 residues within 4Å: Chain D: E.79, P.83, R.121 Chain F: N.133, K.165 4 PLIP interactions: 1 interactions with chain D, 3 interactions with chain F Salt bridges: D:R.121, F:K.165 Hydrogen bonds: F:N.133 Water bridges: F:N.133 PO4.9: 6 residues within 4Å: Chain E: T.15, G.16, T.43, T.96, N.98, S.99 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:G.16, E:N.98, E:S.99 PO4.10: 5 residues within 4Å: Chain D: N.133, K.165 Chain E: E.79, P.83, R.121 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain D Salt bridges: E:R.121, D:K.165 Hydrogen bonds: D:N.133 Water bridges: D:N.133 PO4.11: 6 residues within 4Å: Chain F: T.15, G.16, T.43, T.96, N.98, S.99 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:G.16, F:N.98, F:S.99 PO4.12: 5 residues within 4Å: Chain E: N.133, K.165 Chain F: E.79, P.83, R.121 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:N.133 Water bridges: E:N.133 Salt bridges: E:K.165, F:R.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of dipicolinate synthase subunit B from Bacillus halodurans C. To be Published

Release Date

2010-03-23

Peptides

Dipicolinate synthase subunit B: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Dipicolinate synthase subunit B

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