SMTL ID : 3lqz.1

Crystal Structure of HLA-DP2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: V.116, N.118, E.166, H.167, W.168 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.116 Hydrogen bonds: A:N.118 NAG.2: 1 residues within 4Å: Chain A: N.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.78 NAG.3: 1 residues within 4Å: Chain B: N.42 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.42, B:N.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dai, S. et al., Crystal structure of HLA-DP2 and implications for chronic beryllium disease. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-04-14

Peptides

HLA class II histocompatibility antigen, DP alpha 1 chain: A
HLA-DP2 beta chain linked with DRa peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class II histocompatibility antigen, DP alpha 1 chain

HLA-DP2 beta chain linked with DRa peptide

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