SMTL ID : 7t2a.2 (1 other biounit)

Crystal structure of HLA-DP4 in complex with Ply

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.04 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: V.116, N.118, E.166, H.167, W.168 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.116 Hydrogen bonds: A:W.168 NAG.2: 1 residues within 4Å: Chain B: N.19 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ciacchi, L. et al., CD4 + T cell-mediated recognition of a conserved cholesterol-dependent cytolysin epitope generates broad antibacterial immunity. Immunity (2023)

Release Date

2022-12-28

Peptides

HLA class II histocompatibility antigen, DP alpha 1 chain: A
HLA class II histocompatibility antigen, DP beta 1 chain: B
Pneumolysin-derived peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

HLA class II histocompatibility antigen, DP alpha 1 chain

HLA class II histocompatibility antigen, DP beta 1 chain

Pneumolysin-derived peptide

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