SMTL ID : 3lxb.1

Interconversion of Human Lysosomal Enzyme Specificities

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 7 residues within 4Å: Chain A: D.2, N.3, G.4, R.7, N.161, G.164, R.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.7, A:D.2 NAG-NAG-BMA-MAN.3: 7 residues within 4Å: Chain B: D.2, N.3, G.4, R.7, N.161, G.164, R.165 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.7, B:R.7 Hydrogen bonds: B:D.2

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: N.184, T.186, E.187, Q.190 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 6 residues within 4Å: Chain A: N.108, F.118, Y.142, C.143, D.144, N.148 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.118, A:N.148 Hydrogen bonds: A:D.144, A:D.144 NAG.7: 5 residues within 4Å: Chain B: N.108, F.118, Y.142, C.143, D.144 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.118 Hydrogen bonds: B:D.144, B:D.144 NAG.8: 2 residues within 4Å: Chain B: N.184, E.187 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.186, B:E.187

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: W.16, D.61, D.62, Y.103, C.111, K.137, D.139, R.196, D.200 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.62, A:D.62, A:K.137, A:K.137, A:R.196, A:D.200 GOL.6: 4 residues within 4Å: Chain A: Q.219, E.220, V.223, D.224 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.219 Water bridges: A:D.224 GOL.9: 8 residues within 4Å: Chain B: D.61, C.111, K.137, D.139, Y.176, R.196, A.199 Ligands: GOL.11 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.61, B:K.137, B:R.196, B:A.199 GOL.10: 4 residues within 4Å: Chain B: Q.219, E.220, V.223, D.224 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.220, B:D.224 GOL.11: 2 residues within 4Å: Chain B: D.200 Ligands: GOL.9 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.200, B:D.200 GOL.12: 2 residues within 4Å: Chain B: D.200, D.202 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:E.327 Hydrogen bonds: B:D.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tomasic, I.B. et al., Interconversion of the specificities of human lysosomal enzymes associated with Fabry and Schindler diseases. J.Biol.Chem. (2010)

Release Date

2010-05-05

Peptides

Alpha-galactosidase A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-galactosidase A

Related Entries With Identical Sequence