SMTL ID : 3m33.3 (3 other biounits)

The crystal structure of a functionally unknown protein from Deinococcus radiodurans R1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: R.22, H.59, P.61 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: R.22, H.59, P.61 Ligand excluded by PLIP

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: F.78, E.97, W.98, N.99 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.99 Water bridges: A:E.97 SO4.3: 4 residues within 4Å: Chain A: L.170, P.205, Y.206, R.207 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.205, A:R.207 SO4.4: 6 residues within 4Å: Chain A: G.20, Y.21, R.22, R.119, P.143, F.185 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.119 Salt bridges: A:R.119 SO4.5: 4 residues within 4Å: Chain A: P.121, T.122, S.123, R.153 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.122, A:S.123, A:R.153 Salt bridges: A:K.101 SO4.6: 4 residues within 4Å: Chain A: R.87, V.95, Y.96, E.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.87, A:E.97 SO4.7: 7 residues within 4Å: Chain A: H.23, R.27, L.29, D.33, P.34, E.208, R.210 6 PLIP interactions: 6 interactions with chain A Water bridges: A:D.33, A:R.119, A:R.119, A:R.210 Salt bridges: A:R.27, A:R.210 SO4.8: 5 residues within 4Å: Chain A: Q.49, T.50, R.51, G.113, A.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.49, A:R.51, A:G.113 SO4.12: 4 residues within 4Å: Chain B: F.78, E.97, W.98, N.99 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.99 Water bridges: B:E.97 SO4.13: 4 residues within 4Å: Chain B: L.170, P.205, Y.206, R.207 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.205, B:R.207 SO4.14: 6 residues within 4Å: Chain B: G.20, Y.21, R.22, R.119, P.143, F.185 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.119 Salt bridges: B:R.119 SO4.15: 4 residues within 4Å: Chain B: P.121, T.122, S.123, R.153 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.122, B:S.123, B:R.153 Salt bridges: B:K.101 SO4.16: 4 residues within 4Å: Chain B: R.87, V.95, Y.96, E.97 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.87, B:E.97 SO4.17: 7 residues within 4Å: Chain B: H.23, R.27, L.29, D.33, P.34, E.208, R.210 6 PLIP interactions: 6 interactions with chain B Water bridges: B:D.33, B:R.119, B:R.119, B:R.210 Salt bridges: B:R.27, B:R.210 SO4.18: 5 residues within 4Å: Chain B: Q.49, T.50, R.51, G.113, A.133 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.49, B:R.51, B:G.113

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 10 residues within 4Å: Chain A: H.23, W.25, P.143, R.182, M.186, Y.206, R.207, E.208, E.209, R.210 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.182, A:R.182, A:E.208, A:E.209, A:R.210 Water bridges: A:R.207, A:E.209 GOL.10: 4 residues within 4Å: Chain A: R.22, D.62, R.65, R.118 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.22, A:R.22, A:D.62, A:R.65, A:R.118 GOL.19: 10 residues within 4Å: Chain B: H.23, W.25, P.143, R.182, M.186, Y.206, R.207, E.208, E.209, R.210 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.182, B:R.182, B:E.208, B:E.209, B:R.210 Water bridges: B:R.207, B:E.209 GOL.20: 4 residues within 4Å: Chain B: R.22, D.62, R.65, R.118 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.22, B:R.22, B:D.62, B:R.65, B:R.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a functionally unknown protein from Deinococcus radiodurans R1. To be Published

Release Date

2010-03-31

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uncharacterized protein

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