SMTL ID : 3md3.1 (1 other biounit)

Crystal Structure of the First Two RRM Domains of Yeast Poly(U) Binding Protein (Pub1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: N.7, N.68, N.69, I.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.7, A:I.70 SO4.2: 2 residues within 4Å: Chain A: R.105, K.109 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.105, A:K.109 SO4.3: 3 residues within 4Å: Chain A: S.82, S.116, H.118 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.82, A:S.82 Water bridges: A:S.116 Salt bridges: A:H.118 SO4.4: 3 residues within 4Å: Chain A: H.52, N.55 Ligands: GOL.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.55 Salt bridges: A:H.52 SO4.5: 3 residues within 4Å: Chain A: R.157 Ligands: GOL.11, GOL.16 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.157 SO4.6: 3 residues within 4Å: Chain A: R.1, Q.50, S.51 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.51 Water bridges: A:R.1 Salt bridges: A:R.1 SO4.7: 4 residues within 4Å: Chain A: F.88, S.138, Q.139, D.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.139, A:D.140, A:D.140 SO4.8: 2 residues within 4Å: Chain A: T.103, N.106 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.103, A:N.106 Water bridges: A:T.103

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 2 residues within 4Å: Chain A: F.45, Q.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.78 GOL.10: 2 residues within 4Å: Chain A: Q.80, Q.81 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.80, A:Q.81 GOL.11: 6 residues within 4Å: Chain A: D.94, L.95, R.129, G.130, R.157 Ligands: SO4.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.94 Water bridges: A:R.129 GOL.12: 4 residues within 4Å: Chain A: Q.81, N.89, F.133, A.164 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.81 Water bridges: A:S.82, A:N.89, A:N.89 GOL.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.14: 2 residues within 4Å: Chain A: N.55 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.55 Water bridges: A:Q.59, A:Q.59 GOL.15: 4 residues within 4Å: Chain A: N.62, K.72, I.73, N.74 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.62, A:I.73, A:I.73, A:N.74, A:N.74 GOL.16: 4 residues within 4Å: Chain A: D.94, R.157, P.158 Ligands: SO4.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Crystal Structure of the First Two RRM Domains of Yeast Poly(U) Binding Protein (Pub1). To be published

Release Date

2010-05-05

Peptides

Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1

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