SMTL ID : 3md3.2 (1 other biounit)

Crystal Structure of the First Two RRM Domains of Yeast Poly(U) Binding Protein (Pub1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: N.7, N.68, N.69, I.70 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: R.105, K.109 Chain B: K.72 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: S.82, S.116, H.118 Chain B: N.74, W.75 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: H.52, N.55 Ligands: GOL.14 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: R.157 Ligands: GOL.11, GOL.16 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: R.1, Q.50, S.51 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: F.88, S.138, Q.139, D.140 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain A: T.103, N.106 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain B: N.7, N.68, N.69, I.70 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain A: K.72 Chain B: R.105, K.109 Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain A: N.74, W.75 Chain B: S.82, S.116, H.118 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain B: H.52, N.55 Ligands: GOL.30 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain B: R.157 Ligands: GOL.27, GOL.32 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain B: R.1, Q.50, S.51 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain B: F.88, S.138, Q.139, D.140 Ligand excluded by PLIP SO4.24: 2 residues within 4Å: Chain B: T.103, N.106 Ligand excluded by PLIP

16 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 7 residues within 4Å: Chain A: F.45, Q.78 Chain B: W.121, D.122, M.123, Q.124, G.126 Ligand excluded by PLIP GOL.10: 5 residues within 4Å: Chain A: Q.80, Q.81 Chain B: D.122, Q.124, R.129 Ligand excluded by PLIP GOL.11: 8 residues within 4Å: Chain A: D.94, L.95, R.129, G.130, R.157 Chain B: A.164, A.165 Ligands: SO4.5 Ligand excluded by PLIP GOL.12: 6 residues within 4Å: Chain A: Q.81, N.89, F.133, A.164 Chain B: R.129, Y.131 Ligand excluded by PLIP GOL.13: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP GOL.14: 2 residues within 4Å: Chain A: N.55 Ligands: SO4.4 Ligand excluded by PLIP GOL.15: 4 residues within 4Å: Chain A: N.62, K.72, I.73, N.74 Ligand excluded by PLIP GOL.16: 5 residues within 4Å: Chain A: D.94, R.157, P.158 Chain B: K.166 Ligands: SO4.5 Ligand excluded by PLIP GOL.25: 7 residues within 4Å: Chain A: W.121, D.122, M.123, Q.124, G.126 Chain B: F.45, Q.78 Ligand excluded by PLIP GOL.26: 5 residues within 4Å: Chain A: D.122, Q.124, R.129 Chain B: Q.80, Q.81 Ligand excluded by PLIP GOL.27: 8 residues within 4Å: Chain A: A.164, A.165 Chain B: D.94, L.95, R.129, G.130, R.157 Ligands: SO4.21 Ligand excluded by PLIP GOL.28: 6 residues within 4Å: Chain A: R.129, Y.131 Chain B: Q.81, N.89, F.133, A.164 Ligand excluded by PLIP GOL.29: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP GOL.30: 2 residues within 4Å: Chain B: N.55 Ligands: SO4.20 Ligand excluded by PLIP GOL.31: 4 residues within 4Å: Chain B: N.62, K.72, I.73, N.74 Ligand excluded by PLIP GOL.32: 5 residues within 4Å: Chain A: K.166 Chain B: D.94, R.157, P.158 Ligands: SO4.21 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Crystal Structure of the First Two RRM Domains of Yeast Poly(U) Binding Protein (Pub1). To be published

Release Date

2010-05-05

Peptides

Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1

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