SMTL ID : 3mdg.1

Crystal Structure of the 25kDa Subunit of Human Cleavage factor Im in complex with RNA UUGUAU

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-dimer

Ligands

1 x U- U- G- U- A- U: RNA (5'-R(*UP*UP*GP*UP*AP*U)-3')(Non-covalent)

U-U-G-U-A-U.1: 17 residues within 4Å: Chain A: E.55, S.58, S.59, V.60, R.63, L.99, G.100, T.102, F.103, F.104, P.155, A.205, P.206, G.207, Y.208, G.209 Ligands: GOL.2 Protein-ligand interaction information (PLIP) not available

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: E.81, F.103, K.105, L.106, K.172, I.211, I.212 Ligands: U-U-G-U-A-U.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.106, A:L.106, A:K.172 GOL.3: 4 residues within 4Å: Chain A: R.68, F.71, D.72, F.153 No protein-ligand interaction detected (PLIP) GOL.4: 5 residues within 4Å: Chain B: E.81, K.105, L.106, K.172, I.211 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.106, B:L.106, B:K.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Q. et al., Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3' processing. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-06-02

Peptides

Cleavage and polyadenylation specificity factor subunit 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cleavage and polyadenylation specificity factor subunit 5

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