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SMTL ID : 3mey.1
Crystal structure of class II aaRS homologue (Bll0957) complexed with ATP
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
homo-dimer
Ligands
2 x
ZN
:
ZINC ION
(Non-covalent)
ZN.1:
3 residues within 4Å:
Chain A:
C.151
,
E.196
,
C.299
4
PLIP interactions
:
3 interactions with chain A
,
1 Ligand-Water interactions
Metal complexes:
A:C.151
,
A:E.196
,
A:C.299
,
H
2
O.3
ZN.4:
3 residues within 4Å:
Chain B:
C.151
,
E.196
,
C.299
5
PLIP interactions
:
3 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
B:C.151
,
B:E.196
,
B:C.299
,
H
2
O.4
,
H
2
O.6
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.2:
4 residues within 4Å:
Chain A:
L.108
,
R.179
,
P.236
Ligands:
ATP.3
No protein-ligand interaction detected (PLIP)
MG.5:
3 residues within 4Å:
Chain B:
R.179
,
R.188
Ligands:
ATP.6
No protein-ligand interaction detected (PLIP)
2 x
ATP
:
ADENOSINE-5'-TRIPHOSPHATE
(Non-covalent)
ATP.3:
19 residues within 4Å:
Chain A:
R.179
,
E.181
,
D.187
,
R.188
,
L.189
,
F.192
,
M.194
,
D.235
,
P.236
,
K.255
,
E.257
,
A.270
,
C.271
,
M.272
,
S.273
,
A.301
,
G.303
,
R.306
Ligands:
MG.2
23
PLIP interactions
:
23 interactions with chain A
Hydrogen bonds:
A:R.179
,
A:E.181
,
A:R.188
,
A:L.189
,
A:E.257
,
A:A.270
,
A:S.273
,
A:S.273
,
A:G.303
Water bridges:
A:K.255
,
A:K.255
,
A:R.306
,
A:R.306
Salt bridges:
A:R.179
,
A:R.179
,
A:R.188
,
A:K.255
,
A:K.255
,
A:R.306
pi-Stacking:
A:F.192
,
A:F.192
pi-Cation interactions:
A:R.306
,
A:R.306
ATP.6:
18 residues within 4Å:
Chain B:
R.179
,
E.181
,
D.187
,
R.188
,
L.189
,
F.192
,
M.194
,
K.255
,
E.257
,
A.270
,
C.271
,
M.272
,
S.273
,
N.275
,
A.301
,
G.303
,
R.306
Ligands:
MG.5
23
PLIP interactions
:
23 interactions with chain B
Hydrogen bonds:
B:R.179
,
B:E.181
,
B:L.189
,
B:A.270
,
B:S.273
,
B:S.273
,
B:N.275
Water bridges:
B:R.188
,
B:R.188
,
B:R.188
,
B:R.188
,
B:A.270
,
B:R.306
Salt bridges:
B:R.179
,
B:R.179
,
B:R.188
,
B:K.255
,
B:K.255
,
B:R.306
pi-Stacking:
B:F.192
,
B:F.192
pi-Cation interactions:
B:R.306
,
B:R.306
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Mocibob, M. et al., Homologs of aminoacyl-tRNA synthetases acylate carrier proteins and provide a link between ribosomal and nonribosomal peptide synthesis. Proc.Natl.Acad.Sci.USA (2010)
Release Date
2010-07-28
Peptides
Bll0957 protein:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
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Secondary Structure
None
DSSP
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SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
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Size
Charged
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Proline
Ser/Thr
Cysteine
Aliphatic
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Bll0957 protein
Related Entries With Identical Sequence
3mf1.1
|
3mf2.1
|
3pzc.1
|
4h2s.1
|
4h2t.1
|
4h2u.1
|
4h2v.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme