SMTL ID : 3mi2.1

Crystal structure of human orotidine-5'-monophosphate decarboxylase complexed with pyrazofurin monophosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

2 x PFU: (1S)-1,4-anhydro-1-(5-carbamoyl-4-hydroxy-1H-pyrazol-3-yl)-5-O-phosphono-D-ribitol(Non-covalent)

PFU.1: 19 residues within 4Å: Chain A: S.56, D.58, K.80, H.82, D.111, K.113, E.169, M.170, S.171, I.200, P.216, Q.229, Y.231, V.248, G.249, R.250 Chain B: D.116, I.117, T.120 21 PLIP interactions: 18 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.56, A:K.80, A:D.111, A:K.113, A:S.171, A:S.171, A:S.171, A:S.171, A:Q.229, A:Y.231, A:Y.231, A:Y.231, A:G.249, A:R.250, B:D.116, B:T.120, B:T.120 Water bridges: A:G.217, A:G.217, A:G.251 Salt bridges: A:R.250 PFU.2: 19 residues within 4Å: Chain A: D.116, I.117, T.120 Chain B: S.56, D.58, K.80, H.82, D.111, K.113, E.169, M.170, S.171, I.200, P.216, Q.229, Y.231, V.248, G.249, R.250 20 PLIP interactions: 18 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.56, B:K.80, B:D.111, B:K.113, B:E.169, B:S.171, B:S.171, B:S.171, B:Q.229, B:Y.231, B:Y.231, B:G.249, B:R.250, A:D.116, A:T.120 Water bridges: B:G.217, B:G.217, B:G.251, B:G.251 Salt bridges: B:R.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meza-Avina, M.E. et al., Structural determinants for the inhibitory ligands of orotidine-5'-monophosphate decarboxylase. Bioorg.Med.Chem. (2010)

Release Date

2010-05-26

Peptides

Uridine 5'-monophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uridine 5'-monophosphate synthase

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