SMTL ID : 3mj6.1

Crystal structure of the gammadelta T cell costimulatory receptor Junctional Adhesion Molecule-Like Protein, JAML

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 1 residues within 4Å: Chain A: N.107 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.109 Hydrogen bonds: A:N.107

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: H.36, N.61, F.80 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.61 Water bridges: A:D.38, A:D.38, A:N.61 NAG.3: 2 residues within 4Å: Chain A: N.71, H.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.71

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: V.37, Y.58, N.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.58, A:N.61

8 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 3 residues within 4Å: Chain A: S.159, G.160, Q.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.160, A:Q.213 FMT.6: 5 residues within 4Å: Chain A: S.170, M.175, S.177, G.178, F.180 No protein-ligand interaction detected (PLIP) FMT.7: 1 residues within 4Å: Chain A: R.129 No protein-ligand interaction detected (PLIP) FMT.8: 5 residues within 4Å: Chain A: S.45, K.46, D.49, A.51, E.53 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.46, A:D.49, A:E.53 FMT.9: 3 residues within 4Å: Chain A: K.93, L.121, P.122 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.123 FMT.10: 3 residues within 4Å: Chain A: K.35, H.36, K.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.36, A:K.106 FMT.11: 5 residues within 4Å: Chain A: E.96, G.97, E.117, L.118, W.119 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.118 FMT.12: 3 residues within 4Å: Chain A: E.53, Y.54, T.66 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.54, A:T.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verdino, P. et al., The molecular interaction of CAR and JAML recruits the central cell signal transducer PI3K. Science (2010)

Release Date

2010-09-22

Peptides

Junctional adhesion molecule-like: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Junctional adhesion molecule-like

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