SMTL ID : 3mmo.1

Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with cyanide

HEC.1: 26 residues within 4Å: Chain A: H.113, A.114, E.115, P.116, D.125, H.126, V.129, R.131, A.179, A.180, C.184, C.187, K.188, R.242, Q.298, C.299, H.300, V.301, Y.303, C.305, F.327, H.361, A.484, N.486 Ligands: HEC.3, CYN.9 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:P.116, A:V.129, A:V.301, A:Y.303, A:Y.303, A:Y.303, A:F.327 Hydrogen bonds: A:A.114, A:A.484, A:N.486 Water bridges: A:K.90, A:K.90, A:H.113, A:R.131, A:H.361 Salt bridges: A:K.90, A:H.113, A:R.131, A:H.361 pi-Stacking: A:H.361 HEC.2: 20 residues within 4Å: Chain A: C.66, H.70, Q.73, F.74, F.77, L.225, N.226, C.227, M.229, C.230, H.231, A.290, S.292, M.295, M.384, Y.395, T.396, H.398 Ligands: HEC.3, HEC.7 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:H.70, A:Q.73, A:L.225, A:A.290, A:T.396 Hydrogen bonds: A:Q.73, A:T.396, A:T.396 Metal complexes: A:H.231, A:H.398 HEC.3: 28 residues within 4Å: Chain A: R.81, S.84, P.116, R.117, S.118, H.119, F.121, M.122, D.125, C.187, K.188, L.225, M.229, S.292, M.295, C.296, Q.298, C.299, H.300, C.379, H.383, M.384, Q.400, R.401 Ligands: HEC.1, HEC.2, HEC.4, CA.11 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:P.116, A:L.225, A:H.383 Hydrogen bonds: A:P.116, A:R.117, A:F.121, A:D.125 Water bridges: A:R.81, A:R.81, A:R.81 Metal complexes: A:H.119, A:H.300 HEC.4: 24 residues within 4Å: Chain A: N.293, C.296, H.300, E.363, A.364, F.367, H.372, V.377, A.378, C.379, C.382, H.383, T.402, P.403, R.404, I.427, K.431, N.486, S.487, F.490, H.491 Ligands: HEC.3, HEC.5, CA.11 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:H.300, A:E.363, A:E.363, A:F.367, A:V.377, A:P.403, A:I.427, A:N.486, A:F.490, A:F.490 Hydrogen bonds: A:T.402 Water bridges: A:R.81, A:R.81, A:R.404, A:R.404, A:K.431, A:K.431, A:N.486 Salt bridges: A:R.404, A:K.431 Metal complexes: A:H.383, A:H.491 HEC.5: 21 residues within 4Å: Chain A: V.371, H.372, N.375, V.377, D.381, C.382, P.403, A.410, C.411, C.414, H.415, W.418, A.423, I.427, F.490, P.493 Chain C: N.141, W.142, Q.143 Ligands: HEC.4, PG4.17 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain C, Hydrophobic interactions: A:V.371, A:V.377, A:P.403, A:W.418, A:I.427, A:F.490, C:Q.143 Water bridges: A:N.375 Metal complexes: A:H.372, A:H.415 Hydrogen bonds: C:W.142, C:Q.143 HEC.6: 25 residues within 4Å: Chain A: A.11, C.14, F.15, H.18, I.21, H.25, V.33, N.34, C.35, H.37, C.38, H.39, T.59, M.61, I.193, L.194, F.228, P.233, H.234, R.239, F.274, R.276, R.282 Ligands: HEC.7, HEC.8 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:A.11, A:F.15, A:I.21, A:I.21, A:V.33, A:T.59, A:I.193, A:L.194, A:F.228, A:P.233, A:F.274 Water bridges: A:R.282 Salt bridges: A:R.239, A:R.276, A:R.282, A:R.282 Metal complexes: A:H.39, A:H.234 HEC.7: 21 residues within 4Å: Chain A: K.29, H.30, V.33, H.37, A.65, C.66, T.68, C.69, H.70, C.227, F.228, H.231, P.233, A.236, G.237 Chain B: H.37, T.68, C.69 Ligands: HEC.2, HEC.6, HEC.29 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:K.29, A:K.29, A:H.231 Water bridges: A:K.29 Salt bridges: A:K.29, A:K.29 Metal complexes: A:H.30, A:H.70 HEC.8: 23 residues within 4Å: Chain A: V.9, Q.13, C.14, C.17, H.18, C.35, H.39, A.41, H.44, V.45, A.48, S.49, S.50, R.52, M.53, R.56, P.57, T.59, L.194, Q.275, R.276, G.277 Ligands: HEC.6 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:V.9, A:A.41, A:V.45, A:A.48, A:M.53, A:P.57 Hydrogen bonds: A:G.277 Water bridges: A:R.276 Salt bridges: A:R.56, A:R.276, A:R.276 pi-Stacking: A:H.18 Metal complexes: A:H.18, A:H.44 HEC.23: 26 residues within 4Å: Chain B: H.113, A.114, E.115, P.116, D.125, H.126, V.129, R.131, A.179, A.180, C.184, C.187, K.188, R.242, Q.298, C.299, H.300, V.301, Y.303, C.305, F.327, H.361, A.484, N.486 Ligands: HEC.25, CYN.31 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:P.116, B:V.129, B:V.301, B:Y.303, B:Y.303, B:Y.303, B:F.327 Hydrogen bonds: B:A.114, B:A.484, B:N.486 Water bridges: B:H.113, B:R.131, B:H.361 Salt bridges: B:K.90, B:H.113, B:R.131, B:H.361 pi-Stacking: B:H.361 HEC.24: 22 residues within 4Å: Chain B: L.63, C.66, H.70, Q.73, F.74, F.77, L.225, N.226, C.227, M.229, C.230, H.231, A.290, S.292, M.295, M.384, K.386, Y.395, T.396, H.398 Ligands: HEC.25, HEC.29 10 PLIP interactions: 10 interactions with chain B, Hydrophobic interactions: B:H.70, B:Q.73, B:L.225, B:A.290, B:T.396 Hydrogen bonds: B:Q.73, B:T.396 Salt bridges: B:K.386 Metal complexes: B:H.231, B:H.398 HEC.25: 28 residues within 4Å: Chain B: R.81, S.84, P.116, R.117, S.118, H.119, F.121, M.122, D.125, C.187, K.188, L.225, M.229, S.292, M.295, C.296, Q.298, C.299, H.300, C.379, H.383, M.384, Q.400, R.401 Ligands: HEC.23, HEC.24, HEC.26, CA.33 11 PLIP interactions: 11 interactions with chain B, Hydrophobic interactions: B:P.116, B:H.383 Hydrogen bonds: B:R.117, B:S.118, B:F.121 Water bridges: B:R.81, B:R.81, B:R.81, B:Q.400 Metal complexes: B:H.119, B:H.300 HEC.26: 24 residues within 4Å: Chain B: N.293, C.296, H.300, E.363, A.364, F.367, H.372, V.377, A.378, C.379, C.382, H.383, T.402, P.403, R.404, I.427, K.431, N.486, S.487, F.490, H.491 Ligands: HEC.25, HEC.27, CA.33 21 PLIP interactions: 21 interactions with chain B, Hydrophobic interactions: B:H.300, B:E.363, B:E.363, B:F.367, B:V.377, B:P.403, B:I.427, B:N.486, B:F.490, B:F.490 Hydrogen bonds: B:T.402 Water bridges: B:R.81, B:R.81, B:R.404, B:R.404, B:K.431, B:N.486 Salt bridges: B:R.404, B:K.431 Metal complexes: B:H.383, B:H.491 HEC.27: 21 residues within 4Å: Chain B: V.371, H.372, N.375, V.377, D.381, C.382, P.403, A.410, C.411, C.414, H.415, W.418, I.427, F.490, P.493 Chain F: N.141, W.142, Q.143 Ligands: HEC.26, PG4.39, PG4.41 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain F, Hydrophobic interactions: B:V.371, B:V.377, B:P.403, B:W.418, B:I.427, B:F.490, F:Q.143 Water bridges: B:N.375 Metal complexes: B:H.372, B:H.415 Hydrogen bonds: F:W.142, F:Q.143, F:Q.143 HEC.28: 25 residues within 4Å: Chain B: A.11, C.14, F.15, H.18, I.21, H.25, V.33, N.34, C.35, H.37, C.38, H.39, T.59, M.61, I.193, L.194, F.228, P.233, H.234, R.239, F.274, R.276, R.282 Ligands: HEC.29, HEC.30 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:A.11, B:F.15, B:I.21, B:I.21, B:V.33, B:T.59, B:I.193, B:L.194, B:F.228, B:P.233, B:F.274 Water bridges: B:R.282 Salt bridges: B:R.239, B:R.276, B:R.282, B:R.282 Metal complexes: B:H.39, B:H.234 HEC.29: 20 residues within 4Å: Chain A: H.37, T.68, C.69 Chain B: K.29, H.30, V.33, H.37, A.65, C.66, C.69, H.70, C.227, F.228, H.231, P.233, A.236, G.237 Ligands: HEC.7, HEC.24, HEC.28 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:K.29, B:K.29, B:V.33, B:H.231 Water bridges: B:K.29 Salt bridges: B:K.29, B:K.29 Metal complexes: B:H.30, B:H.70 HEC.30: 23 residues within 4Å: Chain B: Q.13, C.14, C.17, H.18, C.35, H.39, A.41, H.44, V.45, A.48, S.49, S.50, R.51, R.52, M.53, R.56, P.57, T.59, L.194, Q.275, R.276, G.277 Ligands: HEC.28 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:A.41, B:V.45, B:M.53, B:P.57 Water bridges: B:Q.275, B:R.276, B:R.276, B:R.278, B:R.278 Salt bridges: B:R.56, B:R.276 pi-Stacking: B:H.18 Metal complexes: B:H.18, B:H.44 HEC.48: 26 residues within 4Å: Chain C: H.113, A.114, E.115, P.116, D.125, H.126, V.129, R.131, A.179, A.180, C.184, C.187, K.188, R.242, Q.298, C.299, H.300, V.301, Y.303, C.305, F.327, H.361, A.484, N.486