SMTL ID : 3mmr.2 (1 other biounit)

Structure of Plasmodium falciparum Arginase in complex with ABH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

homo-hexamer

Ligands

12 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.195, D.218, D.222, D.325 Ligands: MN.2, ABH.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.195, A:D.218, A:D.222, A:D.325 MN.2: 6 residues within 4Å: Chain A: D.218, H.220, D.325, D.327 Ligands: MN.1, ABH.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.218, A:H.220, A:D.325, A:D.327, A:D.327 MN.5: 6 residues within 4Å: Chain B: H.195, D.218, D.222, D.325 Ligands: MN.6, ABH.7 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.195, B:D.218, B:D.222, B:D.325 MN.6: 6 residues within 4Å: Chain B: D.218, H.220, D.325, D.327 Ligands: MN.5, ABH.7 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.218, B:H.220, B:D.325, B:D.327, B:D.327 MN.9: 6 residues within 4Å: Chain C: H.195, D.218, D.222, D.325 Ligands: MN.10, ABH.11 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.195, C:D.218, C:D.222, C:D.325 MN.10: 6 residues within 4Å: Chain C: D.218, H.220, D.325, D.327 Ligands: MN.9, ABH.11 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.218, C:H.220, C:D.325, C:D.327, C:D.327 MN.13: 6 residues within 4Å: Chain D: H.195, D.218, D.222, D.325 Ligands: MN.14, ABH.15 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.195, D:D.218, D:D.222, D:D.325 MN.14: 6 residues within 4Å: Chain D: D.218, H.220, D.325, D.327 Ligands: MN.13, ABH.15 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.218, D:H.220, D:D.325, D:D.327, D:D.327 MN.17: 6 residues within 4Å: Chain E: H.195, D.218, D.222, D.325 Ligands: MN.18, ABH.19 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.195, E:D.218, E:D.222, E:D.325 MN.18: 6 residues within 4Å: Chain E: D.218, H.220, D.325, D.327 Ligands: MN.17, ABH.19 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.218, E:H.220, E:D.325, E:D.327, E:D.327 MN.21: 6 residues within 4Å: Chain F: H.195, D.218, D.222, D.325 Ligands: MN.22, ABH.23 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.195, F:D.218, F:D.222, F:D.325 MN.22: 6 residues within 4Å: Chain F: D.218, H.220, D.325, D.327 Ligands: MN.21, ABH.23 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.218, F:H.220, F:D.325, F:D.327, F:D.327

6 x ABH: 2(S)-AMINO-6-BORONOHEXANOIC ACID(Non-covalent)

ABH.3: 17 residues within 4Å: Chain A: H.195, D.218, H.220, D.222, N.224, P.230, S.231, H.235, G.236, D.276, E.279, D.325, D.327, E.370 Chain B: H.383 Ligands: MN.1, MN.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.224, A:S.231, A:G.236, A:D.276, A:E.370 Water bridges: A:N.233, A:G.236, A:G.236, A:E.370 ABH.7: 17 residues within 4Å: Chain B: H.195, D.218, H.220, D.222, N.224, P.230, S.231, H.235, G.236, D.276, E.279, D.325, D.327, E.370 Chain C: H.383 Ligands: MN.5, MN.6 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.224, B:S.231, B:G.236, B:D.276, B:E.370 Water bridges: B:N.233, B:G.236, B:G.236, B:E.370 ABH.11: 17 residues within 4Å: Chain A: H.383 Chain C: H.195, D.218, H.220, D.222, N.224, P.230, S.231, H.235, G.236, D.276, E.279, D.325, D.327, E.370 Ligands: MN.9, MN.10 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:N.224, C:S.231, C:G.236, C:D.276, C:E.370 Water bridges: C:N.233, C:G.236, C:G.236, C:E.370 ABH.15: 17 residues within 4Å: Chain D: H.195, D.218, H.220, D.222, N.224, P.230, S.231, H.235, G.236, D.276, E.279, D.325, D.327, E.370 Chain E: H.383 Ligands: MN.13, MN.14 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:N.224, D:S.231, D:H.235, D:G.236, D:D.276, D:E.370 Water bridges: D:N.233, D:G.236, D:G.236, D:T.339 ABH.19: 17 residues within 4Å: Chain E: H.195, D.218, H.220, D.222, N.224, P.230, S.231, H.235, G.236, D.276, E.279, D.325, D.327, E.370 Chain F: H.383 Ligands: MN.17, MN.18 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:N.224, E:S.231, E:H.235, E:G.236, E:D.276, E:E.370 Water bridges: E:N.233, E:G.236, E:G.236, E:T.339 ABH.23: 17 residues within 4Å: Chain D: H.383 Chain F: H.195, D.218, H.220, D.222, N.224, P.230, S.231, H.235, G.236, D.276, E.279, D.325, D.327, E.370 Ligands: MN.21, MN.22 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:N.224, F:S.231, F:H.235, F:G.236, F:D.276, F:E.370 Water bridges: F:N.233, F:G.236, F:G.236, F:T.339

6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 6 residues within 4Å: Chain A: F.333, N.346, Y.347, R.348 Chain C: D.330, G.343 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.330, C:G.343 BME.8: 6 residues within 4Å: Chain A: D.330, G.343 Chain B: F.333, N.346, Y.347, R.348 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.330, A:G.343 BME.12: 6 residues within 4Å: Chain B: D.330, G.343 Chain C: F.333, N.346, Y.347, R.348 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.330, B:G.343 BME.16: 6 residues within 4Å: Chain D: F.333, N.346, Y.347, R.348 Chain F: D.330, G.343 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:D.330, F:G.343 BME.20: 6 residues within 4Å: Chain D: D.330, G.343 Chain E: F.333, N.346, Y.347, R.348 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.330, D:G.343 BME.24: 6 residues within 4Å: Chain E: D.330, G.343 Chain F: F.333, N.346, Y.347, R.348 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:D.330, E:G.343

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dowling, D.P. et al., Crystal structure of arginase from Plasmodium falciparum and implications for L-arginine depletion in malarial infection . Biochemistry (2010)

Release Date

2010-06-23

Peptides

Arginase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Arginase

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