SMTL ID : 3sl0.2 (1 other biounit)

Crystal Structure of P. falciparum arginase complexed with 2-amino-6-borono-2-(difluoromethyl)hexanoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

12 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.218, H.220, D.325, D.327 Ligands: MN.2, FB5.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.218, A:H.220, A:D.325, A:D.327, A:D.327 MN.2: 6 residues within 4Å: Chain A: H.195, D.218, D.222, D.325 Ligands: MN.1, FB5.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.195, A:D.218, A:D.222, A:D.325, H2O.8 MN.4: 6 residues within 4Å: Chain B: D.218, H.220, D.325, D.327 Ligands: MN.5, FB5.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.218, B:H.220, B:D.325, B:D.327, B:D.327 MN.5: 6 residues within 4Å: Chain B: H.195, D.218, D.222, D.325 Ligands: MN.4, FB5.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.195, B:D.218, B:D.222, B:D.325, H2O.15 MN.7: 6 residues within 4Å: Chain C: D.218, H.220, D.325, D.327 Ligands: MN.8, FB5.9 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.218, C:H.220, C:D.325, C:D.327, C:D.327 MN.8: 6 residues within 4Å: Chain C: H.195, D.218, D.222, D.325 Ligands: MN.7, FB5.9 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.195, C:D.218, C:D.222, C:D.325, H2O.23 MN.10: 6 residues within 4Å: Chain D: D.218, H.220, D.325, D.327 Ligands: MN.11, FB5.12 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.218, D:H.220, D:D.325, D:D.327, D:D.327 MN.11: 6 residues within 4Å: Chain D: H.195, D.218, D.222, D.325 Ligands: MN.10, FB5.12 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.195, D:D.218, D:D.222, D:D.325, H2O.31 MN.13: 6 residues within 4Å: Chain E: D.218, H.220, D.325, D.327 Ligands: MN.14, FB5.15 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.218, E:H.220, E:D.325, E:D.327, E:D.327 MN.14: 6 residues within 4Å: Chain E: H.195, D.218, D.222, D.325 Ligands: MN.13, FB5.15 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.195, E:D.218, E:D.222, E:D.325, H2O.39 MN.16: 6 residues within 4Å: Chain F: D.218, H.220, D.325, D.327 Ligands: MN.17, FB5.18 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.218, F:H.220, F:D.325, F:D.327, F:D.327 MN.17: 6 residues within 4Å: Chain F: H.195, D.218, D.222, D.325 Ligands: MN.16, FB5.18 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.195, F:D.218, F:D.222, F:D.325, H2O.47

6 x FB5: 2-(difluoromethyl)-6-(dihydroxyboranyl)-L-norleucine(Non-covalent)

FB5.3: 16 residues within 4Å: Chain A: D.218, H.220, D.222, N.224, P.230, S.231, H.235, G.236, D.276, E.279, D.325, D.327, E.370 Chain B: H.383 Ligands: MN.1, MN.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.224, A:S.231, A:D.276, A:D.327 Water bridges: A:D.222, A:S.231, A:H.235, A:G.236, A:G.236, A:T.339 FB5.6: 16 residues within 4Å: Chain B: D.218, H.220, D.222, N.224, P.230, S.231, H.235, G.236, D.276, E.279, D.325, D.327, E.370 Chain C: H.383 Ligands: MN.4, MN.5 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:N.224, B:S.231, B:D.276, B:D.327 Water bridges: B:D.222, B:S.231, B:H.235, B:G.236, B:G.236, B:T.339 FB5.9: 16 residues within 4Å: Chain A: H.383 Chain C: D.218, H.220, D.222, N.224, P.230, S.231, H.235, G.236, D.276, E.279, D.325, D.327, E.370 Ligands: MN.7, MN.8 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:N.224, C:S.231, C:D.276, C:D.327 Water bridges: C:D.222, C:S.231, C:H.235, C:G.236, C:G.236, C:T.339 FB5.12: 16 residues within 4Å: Chain D: D.218, H.220, D.222, N.224, P.230, S.231, H.235, G.236, D.276, E.279, D.325, D.327, E.370 Chain E: H.383 Ligands: MN.10, MN.11 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:N.224, D:S.231, D:D.276, D:D.327 Water bridges: D:D.222, D:S.231, D:H.235, D:G.236, D:G.236, D:T.339, D:T.339 FB5.15: 16 residues within 4Å: Chain E: D.218, H.220, D.222, N.224, P.230, S.231, H.235, G.236, D.276, E.279, D.325, D.327, E.370 Chain F: H.383 Ligands: MN.13, MN.14 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:N.224, E:S.231, E:D.276, E:D.327 Water bridges: E:D.222, E:S.231, E:H.235, E:G.236, E:G.236, E:T.339, E:T.339 FB5.18: 16 residues within 4Å: Chain D: H.383 Chain F: D.218, H.220, D.222, N.224, P.230, S.231, H.235, G.236, D.276, E.279, D.325, D.327, E.370 Ligands: MN.16, MN.17 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:N.224, F:S.231, F:D.276, F:D.327 Water bridges: F:D.222, F:S.231, F:H.235, F:G.236, F:G.236, F:T.339, F:T.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ilies, M. et al., Binding of alpha , alpha-disubstituted amino acids to arginase suggests new avenues for inhibitor design. J.Med.Chem. (2011)

Release Date

2011-07-20

Peptides

Arginase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Arginase

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