SMTL ID : 3mnp.1

Crystal structure of the agonist form of mouse glucocorticoid receptor stabilized by (A611V, V708A, E711G) mutations at 1.50A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: E.24, V.27, A.91, W.94, R.95, Y.144, Y.147, K.151 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.24, A:E.24, A:A.91, A:R.95, A:Y.147 Water bridges: A:V.27 GOL.4: 5 residues within 4Å: Chain A: P.14, T.15, L.16, E.180, K.183 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.16, A:E.180, A:K.183 Water bridges: A:P.14

1 x DEX: DEXAMETHASONE(Non-covalent)

DEX.2: 19 residues within 4Å: Chain A: M.44, L.47, N.48, G.51, Q.54, W.84, M.85, M.88, V.89, R.95, F.107, Q.126, M.130, L.216, Y.219, C.220, T.223, I.231, F.233 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.47, A:W.84, A:M.88, A:V.89, A:Q.126, A:L.216, A:Y.219 Hydrogen bonds: A:N.48, A:Q.54, A:R.95, A:T.223 Water bridges: A:L.92

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.3: 5 residues within 4Å: Chain A: S.39, A.40, L.120, P.121, C.122 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.40 SCN.5: 3 residues within 4Å: Chain A: G.182, I.185, N.195 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seitz, T. et al., Enhancing the stability and solubility of the glucocorticoid receptor ligand-binding domain by high-throughput library screening. J.Mol.Biol. (2010)

Release Date

2010-09-15

Peptides

Glucocorticoid receptor: A
Nuclear receptor coactivator 2 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucocorticoid receptor

Nuclear receptor coactivator 2 peptide

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