SMTL ID : 5h1e.1

Interaction between vitamin D receptor and coactivator peptide SRC2-3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VDX: 5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL(Non-covalent)

VDX.1: 13 residues within 4Å: Chain A: Y.38, F.45, L.77, S.81, I.115, R.118, S.119, S.122, W.130, V.144, H.149, H.241, Y.245 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.38, A:F.45, A:L.77, A:I.115, A:W.130, A:W.130, A:V.144, A:V.144 Hydrogen bonds: A:Y.38, A:S.81, A:R.118, A:R.118, A:S.122, A:H.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egawa, D. et al., SRC2-3 binds to vitamin D receptor with high sensitivity and strong affinity. Bioorg. Med. Chem. (2017)

Release Date

2017-01-11

Peptides

Vitamin D3 receptor: A
Nuclear receptor coactivator 2 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

Nuclear receptor coactivator 2 peptide

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