- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x MJZ: (2S,3S,4R,5R,6R)-5-(acetylamino)-4-amino-6-{[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-3-hydroxytetrahydro-2H-pyran-2-carboxylic acid(Non-covalent)
- 3 x COA: COENZYME A(Non-covalent)
COA.2: 22 residues within 4Å:- Chain A: T.85, N.86, V.87, Y.88, P.90, V.134, N.136, V.148, P.149, R.151
- Chain B: F.77, P.80, G.112, A.113, F.128, G.130, A.131, L.144, V.146, I.153, Q.162
- Ligands: MJZ.7
16 PLIP interactions:9 interactions with chain A, 7 interactions with chain B- Hydrophobic interactions: A:Y.88, B:F.128, B:L.144
- Hydrogen bonds: A:V.87, A:Y.88, A:Y.88, A:N.136, A:N.136, B:A.113, B:A.131, B:A.131, B:Q.162
- Water bridges: A:Y.88, A:Y.88, B:G.147
- Salt bridges: A:R.151
COA.8: 20 residues within 4Å:- Chain B: T.85, N.86, V.87, Y.88, P.90, N.136, V.148, P.149
- Chain C: F.77, P.80, G.112, A.113, F.128, G.130, A.131, L.144, V.146, I.153, Q.162
- Ligands: MJZ.11
16 PLIP interactions:6 interactions with chain C, 10 interactions with chain B- Hydrophobic interactions: C:F.128, C:L.144, B:Y.88
- Hydrogen bonds: C:A.113, C:A.131, C:A.131, C:Q.162, B:V.87, B:Y.88, B:Y.88, B:N.136, B:N.136
- Water bridges: B:Y.88, B:Y.88, B:R.151, B:R.151
COA.10: 22 residues within 4Å:- Chain A: F.77, P.80, G.112, A.113, F.128, G.130, A.131, L.144, V.146, I.153, Q.162
- Chain C: T.85, N.86, V.87, Y.88, P.90, V.134, N.136, V.148, P.149, R.151
- Ligands: MJZ.1
13 PLIP interactions:6 interactions with chain C, 7 interactions with chain A- Hydrogen bonds: C:V.87, C:Y.88, C:Y.88, C:N.136, C:R.151, A:A.113, A:A.131, A:A.131, A:Q.162
- Water bridges: C:Y.88, A:G.147
- Hydrophobic interactions: A:F.128, A:L.144
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 6 residues within 4Å:- Chain A: R.17, G.19, E.35, I.36, G.37
- Ligands: EDO.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.17, A:R.17
EDO.4: 4 residues within 4Å:- Chain A: F.47, G.49, D.68
- Ligands: MJZ.7
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.50
- Water bridges: A:N.50, A:N.86, A:K.97, A:K.97
EDO.5: 4 residues within 4Å:- Chain A: G.37, E.38, N.56
- Ligands: EDO.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.38, A:N.56
EDO.9: 5 residues within 4Å:- Chain B: F.47, G.49, N.50, D.68
- Ligands: MJZ.11
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.50
- Water bridges: B:N.50, B:N.86
EDO.13: 5 residues within 4Å:- Chain C: F.47, G.49, N.50, D.68
- Ligands: MJZ.1
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.50
- Water bridges: C:N.50, C:D.68, C:N.86
- 1 x NA: SODIUM ION(Non-functional Binders)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., Molecular structure of WlbB, a bacterial N-acetyltransferase involved in the biosynthesis of 2,3-diacetamido-2,3-dideoxy-D-mannuronic acid . Biochemistry (2010)
- Release Date
- 2010-05-12
- Peptides
- Lipopolysaccharides biosynthesis acetyltransferase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x MJZ: (2S,3S,4R,5R,6R)-5-(acetylamino)-4-amino-6-{[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-3-hydroxytetrahydro-2H-pyran-2-carboxylic acid(Non-covalent)
- 3 x COA: COENZYME A(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., Molecular structure of WlbB, a bacterial N-acetyltransferase involved in the biosynthesis of 2,3-diacetamido-2,3-dideoxy-D-mannuronic acid . Biochemistry (2010)
- Release Date
- 2010-05-12
- Peptides
- Lipopolysaccharides biosynthesis acetyltransferase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
F