SMTL ID : 3msh.1

Crystal structure of Hepatitis B X-Interacting Protein at high resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: M.13, P.16, I.18 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.13, A:P.16 Water bridges: A:I.18 GOL.7: 3 residues within 4Å: Chain B: M.13, P.16, I.18 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:M.13, B:P.16 Water bridges: B:I.18

6 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 5 residues within 4Å: Chain A: E.6, L.31, G.32, C.33, R.34 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.33, A:C.33, A:R.34 IPA.3: 3 residues within 4Å: Chain A: E.68, S.69, D.70 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:E.68 Hydrogen bonds: A:D.70, A:D.70, B:D.61 IPA.4: 10 residues within 4Å: Chain A: L.67, E.68, S.69, N.71, G.72, I.74, H.87 Chain B: L.55, T.56 Ligands: PO4.5 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.74, B:T.56 Hydrogen bonds: A:L.67 IPA.8: 5 residues within 4Å: Chain B: E.6, L.31, G.32, C.33, R.34 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:C.33, B:C.33, B:R.34 IPA.9: 3 residues within 4Å: Chain B: E.68, S.69, D.70 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:E.68 Hydrogen bonds: B:D.70, B:D.70 IPA.10: 10 residues within 4Å: Chain A: L.55, T.56 Chain B: L.67, E.68, S.69, N.71, G.72, I.74, H.87 Ligands: PO4.11 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:T.56, B:I.74 Hydrogen bonds: B:L.67

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 6 residues within 4Å: Chain A: T.36, L.37, N.71, H.87 Chain B: L.55 Ligands: IPA.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.71 Water bridges: A:T.36, A:H.41 Salt bridges: A:H.41, A:H.87 PO4.11: 6 residues within 4Å: Chain A: L.55 Chain B: T.36, L.37, N.71, H.87 Ligands: IPA.10 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.71 Water bridges: B:T.36, B:H.41 Salt bridges: B:H.41, B:H.87

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.6: 7 residues within 4Å: Chain A: H.8, D.11, T.12, H.79, D.80, I.82, V.84 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.11, A:T.12 PG4.12: 7 residues within 4Å: Chain B: H.8, D.11, T.12, H.79, D.80, I.82, V.84 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.11, B:D.11, B:T.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Saez, I. et al., Structural Characterization of HBXIP: The Protein That Interacts with the Anti-Apoptotic Protein Survivin and the Oncogenic Viral Protein HBx. J.Mol.Biol. (2011)

Release Date

2010-11-10

Peptides

Hepatitis B virus X-interacting protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Hepatitis B virus X-interacting protein

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