SMTL ID : 3mun.1

APPEP_PEPCLOSE closed state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 2 residues within 4Å: Chain A: Q.61, Y.682 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.682

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.16, G.18, E.19, Q.20 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.19, A:Q.20 Water bridges: A:R.16 Salt bridges: A:R.16 SO4.3: 3 residues within 4Å: Chain A: R.204, R.572, T.575 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.204 Water bridges: A:R.34, A:R.572, A:R.572, A:R.572 Salt bridges: A:R.572 SO4.4: 3 residues within 4Å: Chain A: R.361, R.363, E.364 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.364 Salt bridges: A:R.361 SO4.5: 1 residues within 4Å: Chain A: R.89 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.89 SO4.6: 2 residues within 4Å: Chain A: R.627, A.662 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.627 Salt bridges: A:R.627 SO4.7: 4 residues within 4Å: Chain A: H.334, S.374, G.375, N.377 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.375 Salt bridges: A:H.334

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 3 residues within 4Å: Chain A: S.453, R.531, R.534 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.531, A:R.531, A:R.534, A:R.534 Water bridges: A:Y.686, A:Y.686 GOL.9: 8 residues within 4Å: Chain A: Y.461, F.464, S.541, N.542, V.567, W.582, Y.586, R.627 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.461, A:S.541, A:N.542, A:Y.586, A:R.627 Water bridges: A:W.582

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chiu, T.K. et al., Route of Substrate Entry in Prolyl Endopeptidase. TO BE PUBLISHED

Release Date

2011-05-18

Peptides

Prolyl endopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prolyl endopeptidase

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