SMTL ID : 3muo.1

APPEP_PEPCLOSE+PP closed state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 2 residues within 4Å: Chain A: Y.682, R.687 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.682, A:Y.682

2 x ZPR: N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL(Covalent)(Non-covalent)

ZPR.2: 11 residues within 4Å: Chain A: T.256, Y.461, F.464, S.541, N.542, V.567, W.582, Y.586, R.627, V.628, H.660 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.464, A:F.464, A:V.567, A:W.582, A:W.582, A:V.628 Hydrogen bonds: A:N.542, A:R.627 ZPR.3: 11 residues within 4Å: Chain A: I.457, Y.459, S.475, Y.486, R.538, G.540, S.541, V.565, H.660, S.673, Y.677 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.457, A:Y.486, A:V.565, A:Y.677 Hydrogen bonds: A:R.538 Water bridges: A:S.475

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: R.16, G.18, E.19, Q.20 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.19, A:E.19, A:E.19, A:Q.20 Water bridges: A:R.16 Salt bridges: A:R.16 SO4.5: 1 residues within 4Å: Chain A: R.572 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.34, A:R.34, A:R.34, A:R.204, A:R.572, A:T.575 Salt bridges: A:R.572 SO4.6: 3 residues within 4Å: Chain A: R.361, R.363, E.364 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.364 Water bridges: A:R.361 Salt bridges: A:R.361 SO4.7: 1 residues within 4Å: Chain A: R.89 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.89 SO4.8: 4 residues within 4Å: Chain A: H.334, S.374, G.375, N.377 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.375, A:G.375, A:N.377 Salt bridges: A:H.334

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 3 residues within 4Å: Chain A: S.453, R.531, R.534 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.531, A:R.531, A:R.534, A:R.534 Water bridges: A:Y.686, A:Y.686 GOL.10: 4 residues within 4Å: Chain A: W.86, G.88, R.138, W.381 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.86, A:G.88 Water bridges: A:D.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chiu, T.K. et al., Route of Substrate Entry in Prolyl Endopeptidase. TO BE PUBLISHED

Release Date

2011-06-29

Peptides

Prolyl endopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prolyl endopeptidase

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