SMTL ID : 3n54.1 (2 other biounits)

Crystal Structure of the GerBC protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.294 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.294, A:K.294 Salt bridges: A:K.294 SO4.2: 8 residues within 4Å: Chain A: E.15, H.19, Q.20, Y.21, E.55, A.56, V.57 Ligands: CL.18 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.15, A:H.19, A:Y.21, A:V.57 SO4.3: 1 residues within 4Å: Chain A: R.102 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.102 SO4.4: 1 residues within 4Å: Chain A: H.49 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.49 SO4.5: 1 residues within 4Å: Chain A: R.101 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.101 SO4.6: 3 residues within 4Å: Chain A: K.80, N.84 Ligands: CL.11 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.84, A:N.84 Water bridges: A:K.80 Salt bridges: A:K.80 SO4.7: 6 residues within 4Å: Chain A: R.83, V.193, G.194, E.298, Y.299 Ligands: CL.16 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.299 Water bridges: A:R.83, A:E.298, A:E.298 Salt bridges: A:R.83 SO4.8: 1 residues within 4Å: Chain A: Q.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.89, A:Q.89 SO4.9: 5 residues within 4Å: Chain A: Q.313, H.314, P.315, D.316, Y.317 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.316, A:D.316, A:D.316, A:Y.317 Salt bridges: A:H.314

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: K.80 Ligands: SO4.6 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: Y.25, K.51 Ligand excluded by PLIP CL.13: 1 residues within 4Å: Chain A: Q.4 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain A: R.154 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain A: G.323, H.324 Ligand excluded by PLIP CL.16: 1 residues within 4Å: Ligands: SO4.7 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain A: R.154, Y.158 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain A: A.56, V.57, S.58 Ligands: SO4.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Crystal Structure of the GerBC Component of a Bacillus subtilis Spore Germinant Receptor. J.Mol.Biol. (2010)

Release Date

2010-08-04

Peptides

Spore germination protein B3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Spore germination protein B3

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