SMTL ID : 3n54.3 (2 other biounits)

Crystal Structure of the GerBC protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

54 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.294 Ligand excluded by PLIP SO4.2: 8 residues within 4Å: Chain A: E.15, H.19, Q.20, Y.21, E.55, A.56, V.57 Ligands: CL.18 Ligand excluded by PLIP SO4.3: 6 residues within 4Å: Chain A: R.102 Chain B: S.69, D.70, H.71, K.73, R.101 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: H.49 Chain D: F.117, T.118, K.119 Ligand excluded by PLIP SO4.5: 5 residues within 4Å: Chain A: R.101 Chain B: R.101 Chain C: R.101 Ligands: SO4.23, SO4.41 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: K.80, N.84 Ligands: CL.11 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain A: R.83, V.193, G.194, E.298, Y.299 Ligands: CL.16 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain A: Q.89 Chain B: K.63 Chain D: K.63 Chain F: Q.89 Ligands: SO4.98 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain A: Q.313, H.314, P.315, D.316, Y.317 Ligand excluded by PLIP SO4.19: 1 residues within 4Å: Chain B: K.294 Ligand excluded by PLIP SO4.20: 8 residues within 4Å: Chain B: E.15, H.19, Q.20, Y.21, E.55, A.56, V.57 Ligands: CL.36 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain B: R.102 Chain C: S.69, D.70, H.71, K.73, R.101 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain B: H.49 Chain F: F.117, T.118, K.119 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain A: R.101 Chain B: R.101 Chain C: R.101 Ligands: SO4.5, SO4.41 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain B: K.80, N.84 Ligands: CL.29 Ligand excluded by PLIP SO4.25: 6 residues within 4Å: Chain B: R.83, V.193, G.194, E.298, Y.299 Ligands: CL.34 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain B: Q.89 Chain C: K.63 Chain E: Q.89 Chain F: K.63 Ligands: SO4.80 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain B: Q.313, H.314, P.315, D.316, Y.317 Ligand excluded by PLIP SO4.37: 1 residues within 4Å: Chain C: K.294 Ligand excluded by PLIP SO4.38: 8 residues within 4Å: Chain C: E.15, H.19, Q.20, Y.21, E.55, A.56, V.57 Ligands: CL.54 Ligand excluded by PLIP SO4.39: 6 residues within 4Å: Chain A: S.69, D.70, H.71, K.73, R.101 Chain C: R.102 Ligand excluded by PLIP SO4.40: 4 residues within 4Å: Chain C: H.49 Chain E: F.117, T.118, K.119 Ligand excluded by PLIP SO4.41: 5 residues within 4Å: Chain A: R.101 Chain B: R.101 Chain C: R.101 Ligands: SO4.5, SO4.23 Ligand excluded by PLIP SO4.42: 3 residues within 4Å: Chain C: K.80, N.84 Ligands: CL.47 Ligand excluded by PLIP SO4.43: 6 residues within 4Å: Chain C: R.83, V.193, G.194, E.298, Y.299 Ligands: CL.52 Ligand excluded by PLIP SO4.44: 5 residues within 4Å: Chain A: K.63 Chain C: Q.89 Chain D: Q.89 Chain E: K.63 Ligands: SO4.62 Ligand excluded by PLIP SO4.45: 5 residues within 4Å: Chain C: Q.313, H.314, P.315, D.316, Y.317 Ligand excluded by PLIP SO4.55: 1 residues within 4Å: Chain D: K.294 Ligand excluded by PLIP SO4.56: 8 residues within 4Å: Chain D: E.15, H.19, Q.20, Y.21, E.55, A.56, V.57 Ligands: CL.72 Ligand excluded by PLIP SO4.57: 6 residues within 4Å: Chain D: R.102 Chain E: S.69, D.70, H.71, K.73, R.101 Ligand excluded by PLIP SO4.58: 4 residues within 4Å: Chain A: F.117, T.118, K.119 Chain D: H.49 Ligand excluded by PLIP SO4.59: 5 residues within 4Å: Chain D: R.101 Chain E: R.101 Chain F: R.101 Ligands: SO4.77, SO4.95 Ligand excluded by PLIP SO4.60: 3 residues within 4Å: Chain D: K.80, N.84 Ligands: CL.65 Ligand excluded by PLIP SO4.61: 6 residues within 4Å: Chain D: R.83, V.193, G.194, E.298, Y.299 Ligands: CL.70 Ligand excluded by PLIP SO4.62: 5 residues within 4Å: Chain A: K.63 Chain C: Q.89 Chain D: Q.89 Chain E: K.63 Ligands: SO4.44 Ligand excluded by PLIP SO4.63: 5 residues within 4Å: Chain D: Q.313, H.314, P.315, D.316, Y.317 Ligand excluded by PLIP SO4.73: 1 residues within 4Å: Chain E: K.294 Ligand excluded by PLIP SO4.74: 8 residues within 4Å: Chain E: E.15, H.19, Q.20, Y.21, E.55, A.56, V.57 Ligands: CL.90 Ligand excluded by PLIP SO4.75: 6 residues within 4Å: Chain E: R.102 Chain F: S.69, D.70, H.71, K.73, R.101 Ligand excluded by PLIP SO4.76: 4 residues within 4Å: Chain C: F.117, T.118, K.119 Chain E: H.49 Ligand excluded by PLIP SO4.77: 5 residues within 4Å: Chain D: R.101 Chain E: R.101 Chain F: R.101 Ligands: SO4.59, SO4.95 Ligand excluded by PLIP SO4.78: 3 residues within 4Å: Chain E: K.80, N.84 Ligands: CL.83 Ligand excluded by PLIP SO4.79: 6 residues within 4Å: Chain E: R.83, V.193, G.194, E.298, Y.299 Ligands: CL.88 Ligand excluded by PLIP SO4.80: 5 residues within 4Å: Chain B: Q.89 Chain C: K.63 Chain E: Q.89 Chain F: K.63 Ligands: SO4.26 Ligand excluded by PLIP SO4.81: 5 residues within 4Å: Chain E: Q.313, H.314, P.315, D.316, Y.317 Ligand excluded by PLIP SO4.91: 1 residues within 4Å: Chain F: K.294 Ligand excluded by PLIP SO4.92: 8 residues within 4Å: Chain F: E.15, H.19, Q.20, Y.21, E.55, A.56, V.57 Ligands: CL.108 Ligand excluded by PLIP SO4.93: 6 residues within 4Å: Chain D: S.69, D.70, H.71, K.73, R.101 Chain F: R.102 Ligand excluded by PLIP SO4.94: 4 residues within 4Å: Chain B: F.117, T.118, K.119 Chain F: H.49 Ligand excluded by PLIP SO4.95: 5 residues within 4Å: Chain D: R.101 Chain E: R.101 Chain F: R.101 Ligands: SO4.59, SO4.77 Ligand excluded by PLIP SO4.96: 3 residues within 4Å: Chain F: K.80, N.84 Ligands: CL.101 Ligand excluded by PLIP SO4.97: 6 residues within 4Å: Chain F: R.83, V.193, G.194, E.298, Y.299 Ligands: CL.106 Ligand excluded by PLIP SO4.98: 5 residues within 4Å: Chain A: Q.89 Chain B: K.63 Chain D: K.63 Chain F: Q.89 Ligands: SO4.8 Ligand excluded by PLIP SO4.99: 5 residues within 4Å: Chain F: Q.313, H.314, P.315, D.316, Y.317 Ligand excluded by PLIP

54 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 1 residues within 4Å: Chain C: Q.160 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: K.80 Ligands: SO4.6 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain A: Y.25, K.51 Chain D: E.99 Ligand excluded by PLIP CL.13: 1 residues within 4Å: Chain A: Q.4 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain A: R.154 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain A: G.323, H.324 Ligand excluded by PLIP CL.16: 1 residues within 4Å: Ligands: SO4.7 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain A: R.154, Y.158 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain A: A.56, V.57, S.58 Ligands: SO4.2 Ligand excluded by PLIP CL.28: 1 residues within 4Å: Chain A: Q.160 Ligand excluded by PLIP CL.29: 2 residues within 4Å: Chain B: K.80 Ligands: SO4.24 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain B: Y.25, K.51 Chain F: E.99 Ligand excluded by PLIP CL.31: 1 residues within 4Å: Chain B: Q.4 Ligand excluded by PLIP CL.32: 1 residues within 4Å: Chain B: R.154 Ligand excluded by PLIP CL.33: 2 residues within 4Å: Chain B: G.323, H.324 Ligand excluded by PLIP CL.34: 1 residues within 4Å: Ligands: SO4.25 Ligand excluded by PLIP CL.35: 2 residues within 4Å: Chain B: R.154, Y.158 Ligand excluded by PLIP CL.36: 4 residues within 4Å: Chain B: A.56, V.57, S.58 Ligands: SO4.20 Ligand excluded by PLIP CL.46: 1 residues within 4Å: Chain B: Q.160 Ligand excluded by PLIP CL.47: 2 residues within 4Å: Chain C: K.80 Ligands: SO4.42 Ligand excluded by PLIP CL.48: 3 residues within 4Å: Chain C: Y.25, K.51 Chain E: E.99 Ligand excluded by PLIP CL.49: 1 residues within 4Å: Chain C: Q.4 Ligand excluded by PLIP CL.50: 1 residues within 4Å: Chain C: R.154 Ligand excluded by PLIP CL.51: 2 residues within 4Å: Chain C: G.323, H.324 Ligand excluded by PLIP CL.52: 1 residues within 4Å: Ligands: SO4.43 Ligand excluded by PLIP CL.53: 2 residues within 4Å: Chain C: R.154, Y.158 Ligand excluded by PLIP CL.54: 4 residues within 4Å: Chain C: A.56, V.57, S.58 Ligands: SO4.38 Ligand excluded by PLIP CL.64: 1 residues within 4Å: Chain F: Q.160 Ligand excluded by PLIP CL.65: 2 residues within 4Å: Chain D: K.80 Ligands: SO4.60 Ligand excluded by PLIP CL.66: 3 residues within 4Å: Chain A: E.99 Chain D: Y.25, K.51 Ligand excluded by PLIP CL.67: 1 residues within 4Å: Chain D: Q.4 Ligand excluded by PLIP CL.68: 1 residues within 4Å: Chain D: R.154 Ligand excluded by PLIP CL.69: 2 residues within 4Å: Chain D: G.323, H.324 Ligand excluded by PLIP CL.70: 1 residues within 4Å: Ligands: SO4.61 Ligand excluded by PLIP CL.71: 2 residues within 4Å: Chain D: R.154, Y.158 Ligand excluded by PLIP CL.72: 4 residues within 4Å: Chain D: A.56, V.57, S.58 Ligands: SO4.56 Ligand excluded by PLIP CL.82: 1 residues within 4Å: Chain D: Q.160 Ligand excluded by PLIP CL.83: 2 residues within 4Å: Chain E: K.80 Ligands: SO4.78 Ligand excluded by PLIP CL.84: 3 residues within 4Å: Chain C: E.99 Chain E: Y.25, K.51 Ligand excluded by PLIP CL.85: 1 residues within 4Å: Chain E: Q.4 Ligand excluded by PLIP CL.86: 1 residues within 4Å: Chain E: R.154 Ligand excluded by PLIP CL.87: 2 residues within 4Å: Chain E: G.323, H.324 Ligand excluded by PLIP CL.88: 1 residues within 4Å: Ligands: SO4.79 Ligand excluded by PLIP CL.89: 2 residues within 4Å: Chain E: R.154, Y.158 Ligand excluded by PLIP CL.90: 4 residues within 4Å: Chain E: A.56, V.57, S.58 Ligands: SO4.74 Ligand excluded by PLIP CL.100: 1 residues within 4Å: Chain E: Q.160 Ligand excluded by PLIP CL.101: 2 residues within 4Å: Chain F: K.80 Ligands: SO4.96 Ligand excluded by PLIP CL.102: 3 residues within 4Å: Chain B: E.99 Chain F: Y.25, K.51 Ligand excluded by PLIP CL.103: 1 residues within 4Å: Chain F: Q.4 Ligand excluded by PLIP CL.104: 1 residues within 4Å: Chain F: R.154 Ligand excluded by PLIP CL.105: 2 residues within 4Å: Chain F: G.323, H.324 Ligand excluded by PLIP CL.106: 1 residues within 4Å: Ligands: SO4.97 Ligand excluded by PLIP CL.107: 2 residues within 4Å: Chain F: R.154, Y.158 Ligand excluded by PLIP CL.108: 4 residues within 4Å: Chain F: A.56, V.57, S.58 Ligands: SO4.92 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Crystal Structure of the GerBC Component of a Bacillus subtilis Spore Germinant Receptor. J.Mol.Biol. (2010)

Release Date

2010-08-04

Peptides

Spore germination protein B3: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

D
B

E
B

F
B

Spore germination protein B3

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