SMTL ID : 3n6h.1

Crystal structure of Mandelate racemase/muconate lactonizing protein from Actinobacillus succinogenes 130Z complexed with magnesium/sulfate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: H.33, F.153, K.208, N.342, H.369, R.423 8 PLIP interactions: 8 interactions with chain A Water bridges: A:K.208, A:K.208, A:N.342, A:N.343 Salt bridges: A:H.33, A:K.208, A:H.369, A:R.423 SO4.3: 7 residues within 4Å: Chain B: N.28, H.33, F.153, K.208, N.342, H.369, R.423 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.342 Water bridges: B:R.423 Salt bridges: B:H.33, B:K.208, B:H.369, B:R.423 SO4.6: 8 residues within 4Å: Chain C: N.28, H.33, F.153, K.208, N.342, N.343, H.369, R.423 6 PLIP interactions: 6 interactions with chain C Water bridges: C:Y.151, C:K.208 Salt bridges: C:H.33, C:K.208, C:H.369, C:R.423 SO4.8: 7 residues within 4Å: Chain D: N.28, H.33, F.153, K.208, N.342, H.369, R.423 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:N.342 Salt bridges: D:H.33, D:K.208, D:H.369, D:R.423

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.236, E.261, D.262, N.290 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.236, A:E.261, H2O.4, H2O.5, H2O.6 MG.4: 4 residues within 4Å: Chain B: D.236, E.261, D.262, N.290 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.236, B:E.261, H2O.6 MG.7: 6 residues within 4Å: Chain C: D.236, N.238, E.261, D.262, N.290, M.291 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.236, C:D.236, C:E.261, C:D.262, H2O.11 MG.9: 6 residues within 4Å: Chain D: Y.151, K.208, D.236, E.261, N.290, H.340 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.236

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain B: M.405, D.406 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of Mandelate racemase/muconate lactonizing protein from Actinobacillus succinogenes 130Z complexed with magnesium/sulfate. To be Published

Release Date

2010-07-21

Peptides

Mandelate racemase/muconate lactonizing protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Mandelate racemase/muconate lactonizing protein

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